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Package 192/436HostnameOS / ArchBUILDCHECKBUILD BIN
graph 1.29.2
Seth Falcon
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/graph
Last Changed Rev: 52149 / Revision: 53255
Last Changed Date: 2011-01-27 13:48:26 -0800 (Thu, 27 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: graph
Version: 1.29.2
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch graph_1.29.2.tar.gz
StartedAt: 2011-02-24 19:41:52 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:43:25 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 93.6 seconds
RetCode: 0
Status:  OK 
CheckDir: graph.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/graph.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘graph/DESCRIPTION’ ... OK
* this is package ‘graph’ version ‘1.29.2’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘graph’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: Rgraphviz
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘graph_unit_tests.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

graph.Rcheck/00install.out:

* installing *source* package ‘graph’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -pedantic -c graph.c -o graph.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o graph.so graph.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
mv graph.so BioC_graph.so
installing to /Users/biocbuild/bbs-2.8-bioc/meat/graph.Rcheck/graph/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (graph)

graph.Rcheck/graph-Ex.timings:

nameusersystemelapsed
DFS0.0610.0000.062
IMCA0.3920.0130.407
MAPKsig0.2270.0130.273
MultiGraph-class0.0710.0020.074
acc-methods0.0240.0010.024
addEdge0.0190.0000.020
addNode0.0220.0010.023
adj-methods0.0100.0000.009
apoptosisGraph0.0700.0030.073
attrData-class0.0030.0010.003
aveNumEdges0.0190.0000.020
biocRepos0.0040.0000.004
boundary0.0170.0000.017
buildRepDepGraph0.0000.0010.001
calcProb000
calcSumProb0.0140.0000.014
clearNode0.0120.0000.013
clusterGraph-class0.0070.0010.007
clusteringCoefficient-methods0.0160.0000.016
combineNodes0.0760.0000.079
distGraph-class0.0020.0000.002
duplicatedEdges0.0000.0000.001
edgeMatrix0.0240.0010.025
edgeSets0.0560.0030.059
edgeWeights0.0170.0000.017
fromGXL-methods0.4610.0140.489
graph-class0.0130.0010.015
graph2SparseM0.3300.0080.340
graphAM-class0.0200.0000.021
graphBAM-class0.1010.0030.105
graphExamples0.0100.0010.011
graphNEL-class0.0090.0000.010
inEdges0.0060.0000.006
leaves0.0250.0020.027
listEdges0.0170.0010.018
matrix2Graph0.0420.0010.044
mostEdges0.0370.0010.039
numNoEdges0.0080.0000.009
pancrCaIni0.1560.0030.159
randomEGraph0.0150.0010.016
randomGraph0.0130.0000.013
randomNodeGraph0.0090.0000.010
removeEdge0.0200.0010.020
removeNode0.0070.0000.007
renderInfo-class0.0190.0010.019
reverseEdgeDirections0.0130.0010.013
simpleEdge-class0.0020.0000.002
standardLabeling0.0750.0090.083
subGraph0.0030.0000.003
toDotR-methods0.0460.0050.050
ugraph0.0190.0010.020
validGraph0.0040.0000.003