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Package 186/436HostnameOS / ArchBUILDCHECKBUILD BIN
goProfiles 1.13.1
Alex Sanchez
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/goProfiles
Last Changed Rev: 52475 / Revision: 53255
Last Changed Date: 2011-02-04 15:34:11 -0800 (Fri, 04 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ OK ] OK 

Summary

Package: goProfiles
Version: 1.13.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch goProfiles_1.13.1.tar.gz
StartedAt: 2011-02-24 15:52:00 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 15:53:25 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 84.8 seconds
RetCode: 0
Status:  OK 
CheckDir: goProfiles.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/goProfiles.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'goProfiles/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'goProfiles' version '1.13.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'goProfiles' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

goProfiles.Rcheck/00install.out:

* installing *source* package 'goProfiles' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (goProfiles)

goProfiles.Rcheck/goProfiles-Ex.timings:

nameusersystemelapsed
CD4ids0.0150.0010.017
GOTermsList0.0010.0000.000
basicProfile2.6310.1192.751
compSummary1.8840.0361.919
compareGOProfiles1.7800.0101.791
compareGeneLists7.8170.0607.878
compareProfilesLists000
contractedProfile0.7860.0070.793
conversionFunctions0.0390.0020.041
drosophila0.0050.0000.005
equivSummary000
equivalentGOProfiles1.6760.0081.685
expandedLevel1.1570.0231.181
expandedProfile0.4010.0050.407
fisherGOProfiles4.1250.0604.185
fitGOProfile000
hugoIds0.0210.0010.022
mergeProfilesLists2.9960.0453.042
ngenes0.7970.0060.804
omimIds0.0070.0000.008
plotProfiles2.7990.0492.847
printProfiles3.0700.0473.117
prostateIds0.0060.0010.006