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Package 146/436HostnameOS / ArchBUILDCHECKBUILD BIN
frmaTools 1.3.11
Matthew N. McCall
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/frmaTools
Last Changed Rev: 52954 / Revision: 53255
Last Changed Date: 2011-02-17 12:17:35 -0800 (Thu, 17 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ WARNINGS ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  WARNINGS  OK 

Summary

Package: frmaTools
Version: 1.3.11
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch frmaTools_1.3.11.tar.gz
StartedAt: 2011-02-24 19:16:03 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:17:17 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 74.1 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: frmaTools.Rcheck
Warnings: 1

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/frmaTools.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘frmaTools/DESCRIPTION’ ... OK
* this is package ‘frmaTools’ version ‘1.3.11’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘frmaTools’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
getFidMetaProbesetCore: no visible global function definition for
  ‘dbGetQuery’
getFidMetaProbesetExtended: no visible global function definition for
  ‘dbGetQuery’
getFidMetaProbesetFull: no visible global function definition for
  ‘dbGetQuery’
getFidProbeset: no visible global function definition for ‘dbGetQuery’
hgu133a2ASaFrma: no visible binding for global variable
  ‘hgu133afrmavecs’
hgu133plus2ASaFrma: no visible binding for global variable
  ‘hgu133afrmavecs’
makeVectorPackage: no visible binding for global variable ‘object’
* checking Rd files ... WARNING
Error : makeVectorPackage.Rd: non-ASCII input and no declared encoding

problem found in ‘makeVectorPackage.Rd’
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/Users/biocbuild/bbs-2.8-bioc/meat/frmaTools.Rcheck/00check.log’
for details

frmaTools.Rcheck/00install.out:

* installing *source* package ‘frmaTools’ ...
** R
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (frmaTools)

frmaTools.Rcheck/frmaTools-Ex.timings:

nameusersystemelapsed
convertPlatform16.406 0.49017.004
hgu133a2ASaFrma0.0000.0010.000
hgu133plus2ASaFrma0.0000.0000.001
makeVectorPackage0.0010.0000.001