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Package 134/436HostnameOS / ArchBUILDCHECKBUILD BIN
flowCore 1.17.2
F. Hahne
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/flowCore
Last Changed Rev: 52663 / Revision: 53255
Last Changed Date: 2011-02-14 09:50:21 -0800 (Mon, 14 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: flowCore
Version: 1.17.2
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings flowCore_1.17.2.tar.gz
StartedAt: 2011-02-24 17:53:57 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 17:57:15 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 197.9 seconds
RetCode: 0
Status:  OK  
CheckDir: flowCore.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/flowCore.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'flowCore/DESCRIPTION' ... OK
* this is package 'flowCore' version '1.17.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'flowCore' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

flowCore.Rcheck/00install.out:

* installing *source* package 'flowCore' ...
** libs
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c FastLogicle.cpp -o FastLogicle.o
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c Logicle.cpp -o Logicle.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c biexponential.c -o biexponential.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c inPolygon.c -o inPolygon.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c inPolytope.c -o inPolytope.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c init.c -o init.o
g++ -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -c logicleTransform.cpp -o logicleTransform.o
g++ -shared -s -static-libgcc -o flowCore.dll tmp.def FastLogicle.o Logicle.o biexponential.o inPolygon.o inPolytope.o init.o logicleTransform.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/flowCore.Rcheck/flowCore/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: robustbase
Loading required package: pcaPP
Loading required package: mvtnorm
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (flowCore)

flowCore.Rcheck/flowCore-Ex.timings:

nameusersystemelapsed
EHtrans-class0.230.000.25
Subset-methods1.200.031.27
actionItem-class000
arcsinhTransform0.160.000.17
asinht-class0.050.020.06
biexponentialTransform15.27 0.1415.48
boundaryFilter-class0.280.010.30
characterOrTransformation-class000
coerce0.090.030.12
compensateActionItem-class000
compensateView-class000
compensatedParameter-class0.300.040.33
compensation-class0.660.000.66
curv1Filter-class0.970.000.97
curv2Filter-class3.780.013.83
dg1polynomial-class0.050.000.05
each_col-methods0.080.000.08
ellipsoidGate0.120.000.12
exponential-class0.060.000.06
expressionFilter-class0.150.000.14
fcReference-class000
filter-methods1.690.001.69
filter-on-methods0.230.000.23
filterList-class0.020.000.02
filterResult-class000
filterResultList-class2.700.002.71
filterSet-class0.060.000.06
filterSummary-class0.620.020.64
filterSummaryList-class2.460.012.50
flowFrame-class5.530.115.71
flowSet-class5.030.025.04
fsApply0.310.000.32
gateActionItem-class000
gateView-class000
hyperlog-class1.840.001.85
identifier-methods0.050.000.05
inverseLogicleTransform1.300.031.33
invsplitscale-class0.060.000.08
keyword-methods1.530.051.92
kmeansFilter0.30.00.3
linearTransform0.080.000.07
lnTransform3.530.033.58
logTransform0.190.010.21
logarithm-class0.040.000.04
logicalFilterResult-class0.020.000.02
logicleTransform1.390.001.40
manyFilterResult-class000
multipleFilterResult-class000
norm2Filter-class0.230.020.29
normalizeActionItem-class000
normalizeView-class000
parameters-methods0.070.000.06
polygonGate0.120.000.12
quadGate0.310.010.35
quadratic-class0.070.000.06
quadraticTransform0.070.000.08
ratio-class0.050.020.06
read.FCS0.090.000.09
read.FCSheader0.040.000.04
read.flowSet0.210.000.21
rectangleGate0.240.000.24
sampleFilter-class0.080.020.09
scaleTransform0.090.000.10
singleParameterTransform-class000
sinht-class0.060.000.06
split-methods2.160.042.20
splitScaleTransform3.720.033.75
splitscale-class0.060.000.06
squareroot-class0.060.000.07
subsettingActionItem-class000
subsettingView-class000
timeFilter-class3.420.003.44
transform-class000
transformActionItem-class000
transformFilter-class0.20.00.2
transformList-class1.270.021.28
transformMap-class0.000.010.02
transformView-class000
truncateTransform0.090.000.09
unitytransform-class0.050.020.07
view-class000
workFlow-class000
write.FCS0.090.020.11
write.flowSet1.640.031.67