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Package 83/436HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.5.0
Stephen Nyangoma
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clippda
Last Changed Rev: 52445 / Revision: 53255
Last Changed Date: 2011-02-03 21:05:38 -0800 (Thu, 03 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.5.0
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings clippda_1.5.0.tar.gz
StartedAt: 2011-02-24 17:36:40 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 17:43:07 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 387.2 seconds
RetCode: 0
Status:  OK  
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/clippda.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.5.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clippda' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.140.000.14
aclinicalProteomicsData-methods0.390.060.46
betweensampleVariance4.720.024.73
checkNo.replicates0.310.000.31
clippda-package149.95 0.95151.66
fisherInformation0.180.000.17
liverRawData0.010.000.02
liver_pheno0.000.020.01
liverdata7.390.019.47
mostSimilarTwo000
negativeIntensitiesCorrection2.630.022.64
phenoDataFrame0.120.000.13
pheno_urine000
preProcRepeatedPeakData6.340.006.36
proteomicsExprsData0.380.000.38
proteomicspData0.120.000.12
replicateCorrelations8.830.018.89
sampleClusteredData2.690.002.69
sampleSize93.33 0.1793.82
sampleSize3DscatterPlots0.090.000.10
sampleSizeContourPlots0.050.000.06
sampleSizeParameters45.03 0.2445.44
sample_technicalVariance11.81 0.0011.86
spectrumFilter6.110.006.14