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Package 83/436HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.5.0
Stephen Nyangoma
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/clippda
Last Changed Rev: 52445 / Revision: 53255
Last Changed Date: 2011-02-03 21:05:38 -0800 (Thu, 03 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: clippda
Version: 1.5.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings clippda_1.5.0.tar.gz
StartedAt: 2011-02-24 18:53:57 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 19:01:04 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 426.8 seconds
RetCode: 0
Status:  OK 
CheckDir: clippda.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/clippda.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘clippda/DESCRIPTION’ ... OK
* this is package ‘clippda’ version ‘1.5.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘clippda’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

clippda.Rcheck/00install.out:

* installing *source* package ‘clippda’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.0800.0080.089
aclinicalProteomicsData-methods0.3800.2360.613
betweensampleVariance5.5840.0405.851
checkNo.replicates0.2920.0120.309
clippda-package176.363 0.640179.620
fisherInformation0.2000.0000.202
liverRawData0.0120.0000.014
liver_pheno0.0000.0040.002
liverdata4.4800.0004.513
mostSimilarTwo0.0000.0000.003
negativeIntensitiesCorrection1.4600.0001.478
phenoDataFrame0.0760.0000.078
pheno_urine0.0040.0000.002
preProcRepeatedPeakData3.8490.0043.884
proteomicsExprsData0.5160.0000.518
proteomicspData0.0800.0000.082
replicateCorrelations10.132 0.00810.301
sampleClusteredData1.4360.0001.443
sampleSize112.715 0.304113.876
sampleSize3DscatterPlots0.0600.0040.068
sampleSizeContourPlots0.0440.0000.045
sampleSizeParameters53.492 0.17653.731
sample_technicalVariance13.669 0.05213.762
spectrumFilter3.7040.0083.738