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Package 69/436HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.15.4
Florian Hahne
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/cellHTS2
Last Changed Rev: 52661 / Revision: 53255
Last Changed Date: 2011-02-14 09:48:51 -0800 (Mon, 14 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ OK ] OK 

Summary

Package: cellHTS2
Version: 2.15.4
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.15.4.tar.gz
StartedAt: 2011-02-24 15:16:36 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 15:19:55 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 198.8 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/cellHTS2.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'cellHTS2/DESCRIPTION' ... OK
* this is package 'cellHTS2' version '2.15.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'cellHTS2' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running 'test.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package 'cellHTS2' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.0760.0092.084
ROC-class0.3210.0060.327
ROC1.3870.0031.389
annotate0.9470.0040.951
bdgpbiomart0.1730.0020.175
buildCellHTS20.3260.0010.327
cellHTS-class1.0010.0121.013
configurationAsScreenPlot0.5770.0050.581
configure0.7690.0040.772
convertOldCellHTS1.2450.0011.245
convertWellCoordinates000
data-KcViab0.1240.0010.125
data-KcViabSmall0.0100.0010.010
data-dualCh0.0100.0000.011
data-oldKcViabSmall0.0100.0000.009
getDynamicRange0.7470.0020.749
getEnVisionRawData0.0290.0020.032
getMeasureRepAgreement0.6250.0040.629
getTopTable1.3320.0041.335
getZfactor0.4400.0020.442
imageScreen1.1280.0021.129
normalizePlates1.6610.0011.662
oneRowPerId0.0040.0010.004
plotSpatialEffects1.4180.0031.422
readHTAnalystData1.2030.0031.206
readPlateList0.8490.0050.855
scoreReplicates1.1070.0011.108
scores2calls1.2090.0021.211
setSettings0.0050.0030.008
spatialNormalization1.5670.0031.569
summarizeChannels2.1190.0022.121
summarizeReplicates1.1230.0011.124
templateDescriptionFile0.0000.0010.002
updateCellHTS0.0220.0010.022
write.tabdel0.0230.0010.024
writeReport0.0100.0010.011
writeTab0.0190.0010.020