Package: cellHTS2

Version: 2.15.4

Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.15.4.tar.gz

StartedAt: 2011-02-24 18:35:54 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 18:40:32 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 278.3 seconds

RetCode: 0

Status:  OK

CheckDir: cellHTS2.Rcheck

Warnings: 0

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/cellHTS2.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.15.4’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

name	user	system	elapsed
Bscore	2.898	0.027	2.945
ROC-class	0.455	0.009	0.469
ROC	1.910	0.014	1.940
annotate	1.353	0.012	1.374
bdgpbiomart	0.243	0.006	0.254
buildCellHTS2	0.410	0.002	0.414
cellHTS-class	1.391	0.021	1.413
configurationAsScreenPlot	0.793	0.020	0.815
configure	1.053	0.013	1.069
convertOldCellHTS	1.691	0.006	1.705
convertWellCoordinates	0.001	0.000	0.002
data-KcViab	0.176	0.003	0.180
data-KcViabSmall	0.014	0.001	0.016
data-dualCh	0.015	0.001	0.017
data-oldKcViabSmall	0.013	0.001	0.014
getDynamicRange	1.059	0.008	1.079
getEnVisionRawData	0.096	0.003	0.102
getMeasureRepAgreement	0.890	0.006	0.899
getTopTable	1.844	0.015	1.864
getZfactor	0.590	0.006	0.600
imageScreen	1.542	0.010	1.558
normalizePlates	2.319	0.013	2.344
oneRowPerId	0.005	0.001	0.006
plotSpatialEffects	1.918	0.010	1.932
readHTAnalystData	1.714	0.007	1.726
readPlateList	1.282	0.011	1.298
scoreReplicates	1.511	0.008	1.523
scores2calls	1.595	0.009	1.613
setSettings	0.013	0.005	0.017
spatialNormalization	2.186	0.035	2.231
summarizeChannels	2.799	0.021	2.835
summarizeReplicates	1.495	0.008	1.515
templateDescriptionFile	0.003	0.000	0.004
updateCellHTS	0.036	0.002	0.037
write.tabdel	0.034	0.002	0.036
writeReport	0.014	0.001	0.015
writeTab	0.027	0.003	0.029