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Package 29/436HostnameOS / ArchBUILDCHECKBUILD BIN
aroma.light 1.19.3
Henrik Bengtsson
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/aroma.light
Last Changed Rev: 52497 / Revision: 53255
Last Changed Date: 2011-02-05 21:51:52 -0800 (Sat, 05 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  WARNINGS  OK 

Summary

Package: aroma.light
Version: 1.19.3
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings aroma.light_1.19.3.tar.gz
StartedAt: 2011-02-24 17:27:21 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 17:28:34 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 72.6 seconds
RetCode: 0
Status:  OK 
CheckDir: aroma.light.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/aroma.light.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘aroma.light/DESCRIPTION’ ... OK
* this is package ‘aroma.light’ version ‘1.19.3’
* package encoding: latin1
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘aroma.light’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: R.basic
* checking examples ... OK
* checking PDF version of manual ... OK

aroma.light.Rcheck/00install.out:

* installing *source* package ‘aroma.light’ ...
** R
** inst
** preparing package for lazy loading
R.methodsS3 v1.2.1 (2010-09-18) successfully loaded. See ?R.methodsS3 for help.
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (aroma.light)

aroma.light.Rcheck/aroma.light-Ex.timings:

nameusersystemelapsed
backtransformAffine.matrix0.0040.0000.003
backtransformPrincipalCurve.matrix0.8440.0080.853
calibrateMultiscan.matrix000
callNaiveGenotypes.numeric0.5360.0080.555
distanceBetweenLines0.0200.0040.024
findPeaksAndValleys.density0.0520.0000.052
fitPrincipalCurve.matrix0.5840.0080.592
fitXYCurve.matrix0.0640.0000.064
iwpca.matrix0.0200.0000.018
likelihood.smooth.spline0.3440.0000.343
medianPolish.matrix0.0040.0040.006
normalizeAffine.matrix17.957 0.03618.018
normalizeCurveFit.matrix17.901 0.01617.929
normalizeDifferencesToAverage.list0.0200.0000.021
normalizeFragmentLength0.7680.0120.779
normalizeQuantileRank.list0.1240.0000.125
normalizeQuantileRank.matrix0.0680.0000.067
normalizeQuantileSpline.matrix2.3440.0082.353
normalizeTumorBoost.numeric0.0920.0040.096
robustSmoothSpline0.0600.0000.103
sampleCorrelations.matrix0.1960.0000.195
sampleTuples0.0040.0000.001
weightedMedian4.7000.0684.773
wpca.matrix0.0680.0040.071