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Package 24/436HostnameOS / ArchBUILDCHECKBUILD BIN
annaffy 1.23.1
Colin A. Smith
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/annaffy
Last Changed Rev: 51713 / Revision: 53255
Last Changed Date: 2010-12-29 11:10:44 -0800 (Wed, 29 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: annaffy
Version: 1.23.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch annaffy_1.23.1.tar.gz
StartedAt: 2011-02-24 17:56:15 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 17:57:35 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 80.1 seconds
RetCode: 0
Status:  OK 
CheckDir: annaffy.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.8-bioc/meat/annaffy.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘annaffy/DESCRIPTION’ ... OK
* this is package ‘annaffy’ version ‘1.23.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘annaffy’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

annaffy.Rcheck/00install.out:

* installing *source* package ‘annaffy’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (annaffy)

annaffy.Rcheck/annaffy-Ex.timings:

nameusersystemelapsed
aafChromLoc0.7130.0550.857
aafChromosome0.1360.0150.205
aafCytoband0.1680.0160.265
aafDescription0.1220.0140.199
aafGO1.0460.0511.128
aafGenBank0.1190.0150.184
aafLocusLink0.1710.0090.181
aafPathway1.1190.0271.155
aafProbe0.1470.0100.159
aafPubMed0.2970.0701.428
aafSearchText2.0310.0592.230
aafSymbol0.1250.0080.133
aafUniGene0.1190.0140.196
is.annpkg4.7380.4688.838