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Package 253/436HostnameOS / ArchBUILDCHECKBUILD BIN
MassSpecWavelet 1.17.1
Pan Du
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/MassSpecWavelet
Last Changed Rev: 50770 / Revision: 53255
Last Changed Date: 2010-11-09 08:55:43 -0800 (Tue, 09 Nov 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: MassSpecWavelet
Version: 1.17.1
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings MassSpecWavelet_1.17.1.tar.gz
StartedAt: 2011-02-24 18:48:19 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:49:17 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 57.8 seconds
RetCode: 0
Status:  OK  
CheckDir: MassSpecWavelet.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/MassSpecWavelet.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'MassSpecWavelet/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'MassSpecWavelet' version '1.17.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'MassSpecWavelet' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: getRidgeValue.Rd:24-26: Dropping empty section \examples
prepare_Rd: sav.gol.Rd:28-29: Dropping empty section \examples
prepare_Rd: smoothDWT.Rd:22-25: Dropping empty section \details
prepare_Rd: smoothDWT.Rd:29: Dropping empty section \references
prepare_Rd: smoothDWT.Rd:32-34: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

MassSpecWavelet.Rcheck/00install.out:

* installing *source* package 'MassSpecWavelet' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include"          -O3 -Wall  -std=gnu99 -c convolve2.c -o convolve2.o
gcc -shared -s -static-libgcc -o MassSpecWavelet.dll tmp.def convolve2.o -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/MassSpecWavelet.Rcheck/MassSpecWavelet/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (MassSpecWavelet)

MassSpecWavelet.Rcheck/MassSpecWavelet-Ex.timings:

nameusersystemelapsed
MassSpecWavelet.package4.810.265.08
cwt1.220.051.28
extendLength000
extendNBase000
getLocalMaximumCWT0.320.020.34
getRidge0.580.000.58
identifyMajorPeaks5.880.035.91
localMaximum000
peakDetectionCWT8.200.268.47
plotLocalMax0.360.000.36
plotPeak4.230.114.34
plotRidgeList0.540.020.55
tuneInPeakInfo5.870.065.93