Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K [L] M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 239/436HostnameOS / ArchBUILDCHECKBUILD BIN
LVSmiRNA 1.1.3
Stefano Calza
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/LVSmiRNA
Last Changed Rev: 51691 / Revision: 53255
Last Changed Date: 2010-12-28 02:41:26 -0800 (Tue, 28 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: LVSmiRNA
Version: 1.1.3
Command: E:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings LVSmiRNA_1.1.3.tar.gz
StartedAt: 2011-02-24 18:40:09 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:41:06 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 56.4 seconds
RetCode: 0
Status:  OK  
CheckDir: LVSmiRNA.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.8-bioc/meat/LVSmiRNA.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'LVSmiRNA/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'LVSmiRNA' version '1.1.3'
* checking package name space information ... OK
* checking package dependencies ... NOTE
Packages which this enhances but not available for checking:
  multicore Rmpi
* checking if this is a source package ... OK
* checking whether package 'LVSmiRNA' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

LVSmiRNA.Rcheck/00install.out:

* installing *source* package 'LVSmiRNA' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include" -DHAVE_ZLIB         -O3 -Wall  -std=gnu99 -c basic_fns.c -o basic_fns.o
basic_fns.c: In function 'lvs_median':
basic_fns.c:146:7: warning: unused variable 'i'
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include" -DHAVE_ZLIB         -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/BBS-2˜1.8-B/R/include" -DHAVE_ZLIB         -O3 -Wall  -std=gnu99 -c lvs_rlm.c -o lvs_rlm.o
gcc -shared -s -static-libgcc -o LVSmiRNA.dll tmp.def basic_fns.o init.o lvs_rlm.o -lRzlib -lgfortran -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lRlapack -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lRblas -LE:/biocbld/BBS-2˜1.8-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.8-bioc/meat/LVSmiRNA.Rcheck/LVSmiRNA/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: SparseM
Package SparseM (0.86) loaded.
	   To cite, see citation("SparseM")


Attaching package: 'SparseM'

The following object(s) are masked from 'package:base':

    backsolve

Creating a new generic function for "plot" in "LVSmiRNA"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (LVSmiRNA)

LVSmiRNA.Rcheck/LVSmiRNA-Ex.timings:

nameusersystemelapsed
RLM0.060.000.06
estVC000
lvs000
plotRA000
read.mir000
rlmFit000
summarize000