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Package 223/436HostnameOS / ArchBUILDCHECKBUILD BIN
KCsmart 2.9.1
Jorma de Ronde
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/KCsmart
Last Changed Rev: 53027 / Revision: 53255
Last Changed Date: 2011-02-21 07:46:26 -0800 (Mon, 21 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ OK ] OK 

Summary

Package: KCsmart
Version: 2.9.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch KCsmart_2.9.1.tar.gz
StartedAt: 2011-02-24 16:02:28 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 16:04:43 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 134.6 seconds
RetCode: 0
Status:  OK 
CheckDir: KCsmart.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/KCsmart.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'KCsmart/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'KCsmart' version '2.9.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'KCsmart' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... NOTE
prepare_Rd: calcSpm.Rd:52-53: Dropping empty section \note
prepare_Rd: calcSpm.Rd:50: Dropping empty section \references
prepare_Rd: calcSpmCollection.Rd:54-55: Dropping empty section \note
prepare_Rd: calcSpmCollection.Rd:52: Dropping empty section \references
prepare_Rd: compareSpmCollection.Rd:28-29: Dropping empty section \note
prepare_Rd: compareSpmCollection.Rd:26: Dropping empty section \references
prepare_Rd: getSigRegionsCompKC.Rd:30-31: Dropping empty section \note
prepare_Rd: getSigRegionsCompKC.Rd:28: Dropping empty section \references
prepare_Rd: getSigSegments.Rd:29-30: Dropping empty section \note
prepare_Rd: hsSampleData.Rd:12-13: Dropping empty section \references
prepare_Rd: idPoints.Rd:29-30: Dropping empty section \note
prepare_Rd: plot.Rd:39-40: Dropping empty section \details
prepare_Rd: plot.Rd:51-52: Dropping empty section \note
prepare_Rd: plotScaleSpace.Rd:25-26: Dropping empty section \note
prepare_Rd: write.table.Rd:79-81: Dropping empty section \value
prepare_Rd: write.table.Rd:83-84: Dropping empty section \note
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

KCsmart.Rcheck/00install.out:

* installing *source* package 'KCsmart' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: multtest
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: splines
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
Creating a new generic function for "sort" in "KCsmart"
Creating a new generic function for "unlist" in "KCsmart"
Creating a new generic function for "write.table" in "KCsmart"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (KCsmart)

KCsmart.Rcheck/KCsmart-Ex.timings:

nameusersystemelapsed
KCsmart-package23.737 2.43726.174
calcSpm1.2920.2031.495
calcSpmCollection12.631 2.68415.317
compKc-class0.0010.0010.001
compKcSigRegions-class000
compareSpmCollection13.137 2.56715.706
findSigLevelFdr2.6120.4913.103
findSigLevelTrad2.6770.5063.183
getSigRegionsCompKC13.438 2.50115.940
getSigSegments2.3360.5082.844
idPoints0.0290.0010.029
plot2.7490.5373.287
plotScaleSpace5.1651.0486.215
samplePointMatrix-class0.0010.0000.001
sigSegments-class0.0000.0000.001
spmCollection-class0.0000.0000.001
write.table2.2460.4682.713