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Package 206/436HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.5.3
Heidi Dvinge
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HTqPCR
Last Changed Rev: 52078 / Revision: 53255
Last Changed Date: 2011-01-26 08:35:09 -0800 (Wed, 26 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: HTqPCR
Version: 1.5.3
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings HTqPCR_1.5.3.tar.gz
StartedAt: 2011-02-24 20:11:55 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:13:08 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 73.5 seconds
RetCode: 0
Status:  OK  
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/HTqPCR.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HTqPCR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTqPCR' version '1.5.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTqPCR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* installing *source* package 'HTqPCR' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package3.560.003.72
cbind0.030.000.03
changeCtLayout0.040.000.03
clusterCt0.620.030.67
filterCategory0.090.020.16
filterCtData0.270.000.30
heatmapSig1.660.001.65
limmaCtData0.970.000.97
mannwhitneyCtData1.580.011.62
normalizeCtData0.440.000.44
plotCVBoxes0.180.000.19
plotCtArray0.190.020.20
plotCtBoxes0.060.000.06
plotCtCard0.070.000.06
plotCtCategory2.870.012.89
plotCtCor0.040.000.05
plotCtDensity0.030.000.03
plotCtHeatmap3.160.003.15
plotCtHistogram0.020.000.02
plotCtOverview0.120.000.13
plotCtPCA0.050.000.04
plotCtPairs0.800.000.81
plotCtRQ0.420.000.43
plotCtReps0.140.000.14
plotCtScatter0.030.000.03
plotCtSignificance0.420.000.42
plotCtVariation0.840.020.86
plotGenes0.040.000.03
qPCRpros0.010.000.02
qPCRraw000
qPCRset-class0.030.000.03
readCtData0.080.000.08
setCategory5.440.055.59
ttestCtData1.190.001.19