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Package 207/436HostnameOS / ArchBUILDCHECKBUILD BIN
HTSanalyzeR 2.3.3
Xin Wang
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/HTSanalyzeR
Last Changed Rev: 51498 / Revision: 53255
Last Changed Date: 2010-12-10 16:26:18 -0800 (Fri, 10 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK [ OK ] OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: HTSanalyzeR
Version: 2.3.3
Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings HTSanalyzeR_2.3.3.tar.gz
StartedAt: 2011-02-24 20:12:41 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 20:15:42 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 180.9 seconds
RetCode: 0
Status:  OK  
CheckDir: HTSanalyzeR.Rcheck
Warnings: 0

Command output

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/HTSanalyzeR.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'HTSanalyzeR/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'HTSanalyzeR' version '2.3.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'HTSanalyzeR' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GOGeneSets: no visible binding for global variable 'org.Rn.egGo2EG'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

HTSanalyzeR.Rcheck/00install.out:

* installing *source* package 'HTSanalyzeR' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: annotate
Loading required package: AnnotationDbi
Loading required package: graph

Attaching package: 'graph'

The following object(s) are masked from 'package:igraph':

    degree

Loading required package: RBGL

Attaching package: 'RBGL'

The following object(s) are masked from 'package:igraph':

    transitivity

Loading required package: RColorBrewer
Loading required package: genefilter
Loading required package: splots
Loading required package: vsn
Loading required package: hwriter
Loading required package: locfit
Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Loading required package: grid
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTSanalyzeR)

HTSanalyzeR.Rcheck/HTSanalyzeR-Ex.timings:

nameusersystemelapsed
FDRcollectionGsea1.070.011.11
GOGeneSets3.480.105.29
GSCA-class000
HTSanalyzeR4cellHTS2000
KeggGeneSets5.820.066.58
NWA-class000
aggregatePvals000
analyze000
analyzeGeneSetCollections000
annotationConvertor1.000.031.18
appendGSTerms000
biogridDataDownload000
celAnnotationConvertor1.430.032.17
cellHTS2OutputStatTests000
collectionGsea0.360.000.36
data-KcViab0.700.030.80
drosoAnnotationConvertor1.160.021.17
duplicateRemover000
getTopGeneSets000
gseaPlots000
gseaScores0.020.000.01
hyperGeoTest4.870.034.91
interactome000
mammalAnnotationConvertor2.760.052.82
multiHyperGeoTest000
networkAnalysis000
networkPlot000
pairwiseGsea0.980.011.00
pairwiseGseaPlot000
pairwisePhenoMannWhit000
permutationPvalueCollectionGsea0.560.020.58
plotEnrichMap000
plotGSEA000
plotSubNet0.000.010.01
preprocess000
report000
reportAll000
summarize000
viewEnrichMap000
viewGSEA000
viewSubNet000
writeReportHTSA000