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Package 176/436HostnameOS / ArchBUILDCHECKBUILD BIN
Genominator 1.5.1
James Bullard
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/Genominator
Last Changed Rev: 51309 / Revision: 53255
Last Changed Date: 2010-12-07 09:03:25 -0800 (Tue, 07 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ OK ] OK 

Summary

Package: Genominator
Version: 1.5.1
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch Genominator_1.5.1.tar.gz
StartedAt: 2011-02-24 15:48:25 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 15:50:04 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 98.8 seconds
RetCode: 0
Status:  OK 
CheckDir: Genominator.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/Genominator.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'Genominator/DESCRIPTION' ... OK
* this is package 'Genominator' version '1.5.1'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Genominator' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Genominator.Rcheck/00install.out:

* installing *source* package 'Genominator' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, intersect, mapply, order, paste, pmax, pmax.int,
    pmin, pmin.int, rbind, rep.int, setdiff, table, union

Loading required package: biomaRt
Loading required package: grid
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Genominator)

Genominator.Rcheck/Genominator-Ex.timings:

nameusersystemelapsed
ExpData0.0760.0000.076
addPrimingWeights3.2070.0543.272
aggregateExpData1.1670.0121.232
applyMapped1.4290.0091.439
collapseExpData2.6210.0762.742
computeCoverage0.9100.0260.935
computePrimingWeights0.3540.0270.379
getRegion0.1710.0030.174
importFromAlignedReads0.0000.0000.001
importToExpData0.3820.0040.387
joinExpData3.0750.0354.332
makeGeneRepresentation0.3290.0010.330
mergeWithAnnotation0.3400.0020.437
plot.genominator.coverage2.6830.0482.823
plot.genominator.goodness.of.fit0.7160.0320.768
regionGoodnessOfFit-methods0.6490.0200.669
splitByAnnotation0.6420.0050.649
summarizeByAnnotation0.3490.0040.442
summarizeExpData0.4950.0080.502
validAnnotation0.0190.0010.020
yeastAnno0.2490.0070.256