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Package 195/436HostnameOS / ArchBUILDCHECKBUILD BIN
GSEABase 1.13.3
Biocore Team c/o BioC user list
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GSEABase
Last Changed Rev: 52125 / Revision: 53255
Last Changed Date: 2011-01-27 08:35:36 -0800 (Thu, 27 Jan 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK [ OK ] OK 

Summary

Package: GSEABase
Version: 1.13.3
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GSEABase_1.13.3.tar.gz
StartedAt: 2011-02-24 15:55:07 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 15:56:23 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 76.4 seconds
RetCode: 0
Status:  OK 
CheckDir: GSEABase.Rcheck
Warnings: 0

Command output

* using log directory '/Users/biocbuild/bbs-2.8-bioc/meat/GSEABase.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: ASCII
* using option '--no-vignettes'
* checking for file 'GSEABase/DESCRIPTION' ... OK
* checking extension type ... Package
* this is package 'GSEABase' version '1.13.3'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GSEABase' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... NOTE
'library' or 'require' call not declared from: Rgraphviz
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GSEABase.Rcheck/00install.out:

* installing *source* package 'GSEABase' ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: AnnotationDbi
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GSEABase)

GSEABase.Rcheck/GSEABase-Ex.timings:

nameusersystemelapsed
CollectionType-class0.8230.0280.850
CollectionType-constructors0.2670.0400.307
GSEABase-package0.3280.0090.338
GeneColorSet-class0.2720.0060.279
GeneIdentifierType-class0.1980.0060.204
GeneIdentifierType-constructors0.1590.0050.165
GeneSet-class0.4090.0080.417
GeneSet-methods0.2200.0060.226
GeneSetCollection-class0.0310.0000.032
GeneSetCollection-methods6.8060.1276.934
OBOCollection-class0.1270.0050.132
getOBOCollection0.0890.0040.091
getObjects0.0760.0020.078
goSlim-methods0.8430.0310.874
incidence-methods0.0450.0010.045