Package: GOSemSim

Version: 1.9.7

Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings GOSemSim_1.9.7.tar.gz

StartedAt: 2011-02-24 20:08:45 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 20:10:40 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 114.4 seconds

RetCode: 0

Status:  OK

CheckDir: GOSemSim.Rcheck

Warnings: 0

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/GOSemSim.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GOSemSim/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GOSemSim’ version ‘1.9.7’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GOSemSim’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package ‘GOSemSim’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GOSemSim)

name	user	system	elapsed
GOIdentifiers-class	0.300	0.024	0.323
GOIdentifiers-methods	0.000	0.000	0.001
GeneClusterSet-class	15.473	0.164	17.896
GeneIdentifiers-class	9.708	0.036	9.813
Params-class	0.000	0.000	0.001
Params-methods	0.020	0.004	0.025
clusterSim	9.949	0.036	10.005
geneSim	8.912	0.024	8.945
goSim	0.184	0.000	0.183
mclusterSim	10.529	0.012	10.579
mgeneSim	9.165	0.016	9.199
mgoSim	0.456	0.000	0.470