Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 178/436HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.17.4
Sean Davis
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GEOquery
Last Changed Rev: 52639 / Revision: 53255
Last Changed Date: 2011-02-13 15:36:21 -0800 (Sun, 13 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.4) / i386 [ ERROR ] skipped  skipped 

Summary

Package: GEOquery
Version: 2.17.4
Command: /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R CMD build GEOquery
StartedAt: 2011-02-24 13:32:21 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 13:33:45 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 84.2 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Setting options('download.file.method'='curl')
Found 36 entities...
GPL96 (1 of 36 entities)
GPL97 (2 of 36 entities)
GSM11805 (3 of 36 entities)
GSM11810 (4 of 36 entities)
GSM11814 (5 of 36 entities)
GSM11815 (6 of 36 entities)
GSM11823 (7 of 36 entities)
GSM11827 (8 of 36 entities)
GSM11830 (9 of 36 entities)
GSM11832 (10 of 36 entities)
GSM12067 (11 of 36 entities)
GSM12069 (12 of 36 entities)
GSM12075 (13 of 36 entities)
GSM12078 (14 of 36 entities)
GSM12079 (15 of 36 entities)
GSM12083 (16 of 36 entities)
GSM12098 (17 of 36 entities)
GSM12099 (18 of 36 entities)
GSM12100 (19 of 36 entities)
GSM12101 (20 of 36 entities)
GSM12105 (21 of 36 entities)
GSM12106 (22 of 36 entities)
GSM12268 (23 of 36 entities)
GSM12269 (24 of 36 entities)
GSM12270 (25 of 36 entities)
GSM12274 (26 of 36 entities)
GSM12283 (27 of 36 entities)
GSM12287 (28 of 36 entities)
GSM12298 (29 of 36 entities)
GSM12299 (30 of 36 entities)
GSM12300 (31 of 36 entities)
GSM12301 (32 of 36 entities)
GSM12399 (33 of 36 entities)
GSM12412 (34 of 36 entities)
GSM12444 (35 of 36 entities)
GSM12448 (36 of 36 entities)
Found 1 file(s)
GSE2553_series_matrix.txt.gz
  % Total    % Received % Xferd  Average Speed   Time    Time     Time  Current
                                 Dload  Upload   Total   Spent    Left  Speed

  0 8282k    0     0    0     0      0      0 --:--:--  0:00:01 --:--:--     0
  0 8282k    0 73848    0     0  32869      0  0:04:18  0:00:02  0:04:16  115k
 12 8282k   12 1071k    0     0   333k      0  0:00:24  0:00:03  0:00:21  674k
 30 8282k   30 2534k    0     0   601k      0  0:00:13  0:00:04  0:00:09  978k
 49 8282k   49 4068k    0     0   776k      0  0:00:10  0:00:05  0:00:05 1125k
 66 8282k   66 5509k    0     0   883k      0  0:00:09  0:00:06  0:00:03 1193k
 83 8282k   83 6913k    0     0   958k      0  0:00:08  0:00:07  0:00:01 1378k
100 8282k  100 8282k    0     0  1015k      0  0:00:08  0:00:08 --:--:-- 1458k
File stored at: 
/tmp/Rtmpz3p8ce/GPL1977.soft
File stored at: 
/tmp/Rtmpz3p8ce/GPL97.annot.gz
Loading required package: limma
File stored at: 
/tmp/Rtmpz3p8ce/GPL97.soft
File stored at: 
/tmp/Rtmpz3p8ce/GSM3922.soft
File stored at: 
/tmp/Rtmpz3p8ce/GSM3924.soft
File stored at: 
/tmp/Rtmpz3p8ce/GSM3926.soft
File stored at: 
/tmp/Rtmpz3p8ce/GSM3928.soft
File stored at: 
/tmp/Rtmpz3p8ce/GSM3930.soft
Error in texi2dvi(file = bft, pdf = TRUE, clean = FALSE, quiet = quiet) : 
  Running 'texi2dvi' on 'GEOquery.tex' failed.
Messages:
/usr/bin/texi2dvi: pdflatex exited with bad status, quitting.
/usr/bin/texi2dvi: see GEOquery.log for errors.
Calls: <Anonymous> -> texi2dvi
Execution halted