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Package 178/436HostnameOS / ArchBUILDCHECKBUILD BIN
GEOquery 2.17.4
Sean Davis
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/GEOquery
Last Changed Rev: 52639 / Revision: 53255
Last Changed Date: 2011-02-13 15:36:21 -0800 (Sun, 13 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 
petty Mac OS X Snow Leopard (10.6.4) / i386  ERROR  skipped  skipped 

Summary

Package: GEOquery
Version: 2.17.4
Command: chmod a+r GEOquery -R && D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD build GEOquery
StartedAt: 2011-02-24 15:06:23 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 15:07:05 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 42.5 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'GEOquery/DESCRIPTION' ... OK
* preparing 'GEOquery':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Setting options('download.file.method'='curl')
Found 36 entities...
GPL96 (1 of 36 entities)
GPL97 (2 of 36 entities)
GSM11805 (3 of 36 entities)
GSM11810 (4 of 36 entities)
GSM11814 (5 of 36 entities)
GSM11815 (6 of 36 entities)
GSM11823 (7 of 36 entities)
GSM11827 (8 of 36 entities)
GSM11830 (9 of 36 entities)
GSM11832 (10 of 36 entities)
GSM12067 (11 of 36 entities)
GSM12069 (12 of 36 entities)
GSM12075 (13 of 36 entities)
GSM12078 (14 of 36 entities)
GSM12079 (15 of 36 entities)
GSM12083 (16 of 36 entities)
GSM12098 (17 of 36 entities)
GSM12099 (18 of 36 entities)
GSM12100 (19 of 36 entities)
GSM12101 (20 of 36 entities)
GSM12105 (21 of 36 entities)
GSM12106 (22 of 36 entities)
GSM12268 (23 of 36 entities)
GSM12269 (24 of 36 entities)
GSM12270 (25 of 36 entities)
GSM12274 (26 of 36 entities)
GSM12283 (27 of 36 entities)
GSM12287 (28 of 36 entities)
GSM12298 (29 of 36 entities)
GSM12299 (30 of 36 entities)
GSM12300 (31 of 36 entities)
GSM12301 (32 of 36 entities)
GSM12399 (33 of 36 entities)
GSM12412 (34 of 36 entities)
GSM12444 (35 of 36 entities)
GSM12448 (36 of 36 entities)
Found 1 file(s)
GSE2553_series_matrix.txt.gz

Error: processing vignette 'GEOquery.Rnw' failed with diagnostics:
 chunk 7 
Error in file(con, "r") : cannot open the connection
In addition: Warning messages:
1: In download.file(sprintf("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/%s/%s",  :
  download had nonzero exit status
2: In file(con, "r") :
  cannot open file 'D:\biocbld\bbs-2.8-bioc\tmpdir\RtmpBoU2zb/GSE2553_series_matrix.txt.gz': No such file or directory
Execution halted