Package: CAMERA

Version: 1.7.4

Command: D:\biocbld\bbs-2.8-bioc\R\bin\R.exe CMD check --no-vignettes --timings CAMERA_1.7.4.tar.gz

StartedAt: 2011-02-24 18:56:49 -0800 (Thu, 24 Feb 2011)

EndedAt: 2011-02-24 19:01:18 -0800 (Thu, 24 Feb 2011)

EllapsedTime: 268.9 seconds

RetCode: 0

Status:  OK

CheckDir: CAMERA.Rcheck

Warnings: 0

* using log directory 'D:/biocbld/bbs-2.8-bioc/meat/CAMERA.Rcheck'
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-pc-mingw32 (64-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'CAMERA/DESCRIPTION' ... OK
* this is package 'CAMERA' version '1.7.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'CAMERA' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
xsAnnotate: no visible global function definition for 'mpi.comm.size'
xsAnnotate: no visible global function definition for
  'mpi.spawn.Rslaves'
findAdducts,xsAnnotate: no visible global function definition for
  'mpi.comm.size'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... NOTE
'library' or 'require' call not declared from: RUnit
* checking tests ...
  Running 'doRUnit.R'
 OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

* installing *source* package 'CAMERA' ...
** libs
x86_64-w64-mingw32-gcc -I"D:/biocbld/BBS-2˜1.8-B/R/include"          -O2 -Wall  -std=gnu99 -c fastMatch.c -o fastMatch.o
x86_64-w64-mingw32-gcc -shared -s -static-libgcc -o CAMERA.dll tmp.def fastMatch.o -LD:/biocbld/BBS-2˜1.8-B/R/bin/x64 -lR
installing to D:/biocbld/bbs-2.8-bioc/meat/CAMERA.Rcheck/CAMERA/libs/x64
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (CAMERA)

name	user	system	elapsed
annotate	11.11	0.03	12.10
annotateDiffreport	22.96	0.75	33.83
findAdducts-methods	10.06	0.08	10.14
findIsotopes-methods	1.08	0.03	1.11
findNeutralLoss	1.14	0.03	1.19
findNeutralLossSpecs	1.17	0.02	1.19
getIsotopeCluster	8.89	0.03	8.92
getPeaklist-methods	10.03	0.00	10.03
getpspectra	1	0	1
groupCorr-methods	11.08	0.39	11.88
groupFWHM-methods	2.91	0.05	2.95
xsAnnotate	1.73	0.01	1.75