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Package 57/436HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.9.0
Marcus Dittrich
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BioNet
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: BioNet
Version: 1.9.0
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings BioNet_1.9.0.tar.gz
StartedAt: 2011-02-24 18:16:08 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:18:42 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 153.7 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/BioNet.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BioNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BioNet’ version ‘1.9.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BioNet’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

BioNet.Rcheck/00install.out:

* installing *source* package ‘BioNet’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'browseVignettes()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals0.6360.0360.673
bumOptim1.3200.0041.323
compareNetworks2.4240.0482.619
fbum000
fbumLL1.5480.0001.548
fdrThreshold0.9880.0040.992
fitBumModel1.5080.0001.511
getCompScores3.0360.0163.079
getEdgeList1.440.001.44
hist.bum1.2250.0041.228
largestComp10.348 0.02410.377
largestScoreComp10.089 0.17610.265
loadNetwork.sif000
makeNetwork0.0080.0000.008
mapByVar000
permutateNodes14.361 0.05214.542
piUpper1.3320.0041.342
plot.bum1.4640.0001.473
plot3dModule3.1120.0043.132
plotLLSurface1.1080.0001.112
plotModule3.6040.0043.648
print.bum1.3320.0041.340
pvaluesExample0.0080.0000.009
readHeinzGraph0.2720.0000.270
readHeinzTree0.2600.0040.268
rmSelfLoops0.0080.0000.009
runFastHeinz 9.625 0.01211.450
save3dModule2.3800.0042.391
saveNetwork2.2080.0002.214
scanFDR1.3040.0001.303
scoreFunction1.3770.0321.410
scoreNodes3.9200.0163.939
scoreOffset1.3120.0001.312
subNetwork0.0440.0000.040
summary.bum1.360.001.36
writeHeinz3.0160.0003.025
writeHeinzEdges6.0450.0166.122
writeHeinzNodes2.9520.0002.990