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Package 47/436HostnameOS / ArchBUILDCHECKBUILD BIN
BHC 1.3.0
Rich Savage
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BHC
Last Changed Rev: 50295 / Revision: 53255
Last Changed Date: 2010-10-17 22:57:44 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: BHC
Version: 1.3.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh BHC_1.3.0.tar.gz /Library/Frameworks/R.framework/Versions/2.13/Resources/bin/R BHC.buildbin-libdir
StartedAt: 2011-02-24 21:57:13 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 21:57:25 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 12.8 seconds
RetCode: 0
Status:  OK 
PackageFile: BHC_1.3.0.tgz
PackageFileSize: 87.94 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=BHC.buildbin-libdir BHC_1.3.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BHC’ ...
** libs
*** arch - i386
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c CalculateHyperparameters.cpp -o CalculateHyperparameters.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c OutputDendrogramInformation.cpp -o OutputDendrogramInformation.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c ReadInData.cpp -o ReadInData.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c bayeslink_binf.cpp -o bayeslink_binf.o
bayeslink_binf.cpp: In function ‘double bayeslink_binf(NODE*, int, int, double, double, double, int)’:
bayeslink_binf.cpp:23: warning: ‘node2’ may be used uninitialized in this function
bayeslink_binf.cpp:23: warning: ‘node1’ may be used uninitialized in this function
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c bhc.cpp -o bhc.o
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c binevidence.cpp -o binevidence.o
binevidence.cpp: In function ‘double binevidence(NODE*, int, double**, int, int, int)’:
binevidence.cpp:26: warning: unused variable ‘s1’
binevidence.cpp:26: warning: unused variable ‘s4’
g++ -arch i386 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/i386  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c gammaln.cpp -o gammaln.o
g++ -arch i386 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so CalculateHyperparameters.o OutputDendrogramInformation.o ReadInData.o bayeslink_binf.o bhc.o binevidence.o gammaln.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/BHC.buildbin-libdir/BHC/libs/i386
*** arch - ppc
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c CalculateHyperparameters.cpp -o CalculateHyperparameters.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c OutputDendrogramInformation.cpp -o OutputDendrogramInformation.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c ReadInData.cpp -o ReadInData.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c bayeslink_binf.cpp -o bayeslink_binf.o
bayeslink_binf.cpp: In function ‘double bayeslink_binf(NODE*, int, int, double, double, double, int)’:
bayeslink_binf.cpp:23: warning: ‘node2’ may be used uninitialized in this function
bayeslink_binf.cpp:23: warning: ‘node1’ may be used uninitialized in this function
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c bhc.cpp -o bhc.o
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c binevidence.cpp -o binevidence.o
binevidence.cpp: In function ‘double binevidence(NODE*, int, double**, int, int, int)’:
binevidence.cpp:26: warning: unused variable ‘s1’
binevidence.cpp:26: warning: unused variable ‘s4’
g++ -arch ppc -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/ppc  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c gammaln.cpp -o gammaln.o
g++ -arch ppc -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so CalculateHyperparameters.o OutputDendrogramInformation.o ReadInData.o bayeslink_binf.o bhc.o binevidence.o gammaln.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/BHC.buildbin-libdir/BHC/libs/ppc
*** arch - x86_64
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c CalculateHyperparameters.cpp -o CalculateHyperparameters.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c OutputDendrogramInformation.cpp -o OutputDendrogramInformation.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c ReadInData.cpp -o ReadInData.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c bayeslink_binf.cpp -o bayeslink_binf.o
bayeslink_binf.cpp: In function ‘double bayeslink_binf(NODE*, int, int, double, double, double, int)’:
bayeslink_binf.cpp:23: warning: ‘node2’ may be used uninitialized in this function
bayeslink_binf.cpp:23: warning: ‘node1’ may be used uninitialized in this function
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c bhc.cpp -o bhc.o
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c binevidence.cpp -o binevidence.o
binevidence.cpp: In function ‘double binevidence(NODE*, int, double**, int, int, int)’:
binevidence.cpp:26: warning: unused variable ‘s1’
binevidence.cpp:26: warning: unused variable ‘s4’
g++ -arch x86_64 -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include -I/Library/Frameworks/R.framework/Versions/2.13/Resources/include/x86_64  -I/usr/local/include    -fPIC  -g -O2 -Wall -fasm-blocks -c gammaln.cpp -o gammaln.o
g++ -arch x86_64 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BHC.so CalculateHyperparameters.o OutputDendrogramInformation.o ReadInData.o bayeslink_binf.o bhc.o binevidence.o gammaln.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.8-bioc/meat/BHC.buildbin-libdir/BHC/libs/x86_64
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BHC)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BHC.buildbin-libdir/BHC/libs/i386/BHC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "BHC.buildbin-libdir/BHC/libs/i386/BHC.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR BHC.buildbin-libdir/BHC/libs/ppc/BHC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "BHC.buildbin-libdir/BHC/libs/ppc/BHC.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgcc_s.1.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libgfortran.2.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.5.2.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.13/Resources/lib/libreadline.dylib" "BHC.buildbin-libdir/BHC/libs/x86_64/BHC.so"