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Package 45/436HostnameOS / ArchBUILDCHECKBUILD BIN
BGmix 1.11.1
Alex Lewin
Snapshot Date: 2011-02-24 11:26:35 -0800 (Thu, 24 Feb 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/trunk/madman/Rpacks/BGmix
Last Changed Rev: 52466 / Revision: 53255
Last Changed Date: 2011-02-04 15:23:24 -0800 (Fri, 04 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 
petty Mac OS X Snow Leopard (10.6.4) / i386  OK  OK  OK 

Summary

Package: BGmix
Version: 1.11.1
Command: /home/biocbuild/bbs-2.8-bioc/R/bin/R CMD check --no-vignettes --timings BGmix_1.11.1.tar.gz
StartedAt: 2011-02-24 18:06:20 -0800 (Thu, 24 Feb 2011)
EndedAt: 2011-02-24 18:07:32 -0800 (Thu, 24 Feb 2011)
EllapsedTime: 71.6 seconds
RetCode: 0
Status:  OK 
CheckDir: BGmix.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.8-bioc/meat/BGmix.Rcheck’
* using R version 2.13.0 Under development (unstable) (2011-01-10 r53950)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BGmix/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BGmix’ version ‘1.11.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BGmix’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $BLAS_LIBS ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

BGmix.Rcheck/00install.out:

* installing *source* package ‘BGmix’ ...
checking for gcc... gcc -std=gnu99
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables... 
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc -std=gnu99 accepts -g... yes
checking for gcc -std=gnu99 option to accept ISO C89... none needed
checking for gcc -std=gnu99 option to accept ISO C99... none needed
checking for cos in -lm... yes
Untarring Boost header files...
checking for an ANSI C-conforming const... yes
checking for inline... inline
configure: creating ./config.status
config.status: creating src/Makevars
** libs
g++ -I/home/biocbuild/bbs-2.8-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -DUSING_R -c BGmix_main.cpp -o BGmix_main.o
g++ -I/home/biocbuild/bbs-2.8-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -DUSING_R -c rundir.cpp -o rundir.o
g++ -I/home/biocbuild/bbs-2.8-bioc/R/include -I ../boostIncl -I/usr/local/include    -fpic  -g -O2 -DUSING_R -c updates_BGmix.cpp -o updates_BGmix.o
g++ -shared -L/usr/local/lib64 -o BGmix.so BGmix_main.o rundir.o updates_BGmix.o -lm -L/home/biocbuild/bbs-2.8-bioc/R/lib -lR
rm -r ../boostIncl 
installing to /loc/home/biocbuild/bbs-2.8-bioc/meat/BGmix.Rcheck/BGmix/libs
** R
** data
** inst
** preparing package for lazy loading
KernSmooth 2.23 loaded
Copyright M. P. Wand 1997-2009
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BGmix)

BGmix.Rcheck/BGmix-Ex.timings:

nameusersystemelapsed
BGmix-package2.3760.0722.447
BGmix5.6320.1168.024
EstimatePi03.8360.3404.202
FDRforTailPP 9.013 1.08010.177
FDRplotTailPP3.4520.4003.871
TailPP3.4760.3603.844
calcFDR0.6280.0040.638
ccParams0.6280.0040.652
ccPred0.6040.0200.634
ccSummary0.5880.0081.161
ccTrace0.7960.0200.926
histTailPP3.5050.3883.907
plotBasic0.6160.0120.658
plotCompare0.0000.0000.002
plotFDR0.6320.0120.642
plotMixDensity2.0080.0762.087
plotPredChecks0.6160.0200.641
plotTrace0.9080.0320.940