Back to the "Multiple platform build/check report" A  B  C  D  E  F  G  H  I  J  K  L  M  N  O  P  Q [R] S  T  U  V  W  X  Y  Z 

Package 356/419HostnameOS / ArchBUILDCHECKBUILD BIN
rsbml 2.8.0
Michael Lawrence
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/rsbml
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D

Summary

Package: rsbml
Version: 2.8.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings rsbml_2.8.0.tar.gz
StartedAt: 2011-04-07 08:40:14 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 08:41:36 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 82.0 seconds
RetCode: 0
Status:  OK  
CheckDir: rsbml.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/rsbml.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'rsbml/DESCRIPTION' ... OK
* this is package 'rsbml' version '2.8.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'rsbml' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable compilation flags in Makevars ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

rsbml.Rcheck/00install.out:

* installing *source* package 'rsbml' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c StringMap.c -o StringMap.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/common.h:28,
                 from StringMap.c:52:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c check.c -o check.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from check.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c doc.c -o doc.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from doc.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c dom.c -o dom.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from dom.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c graph.c -o graph.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from graph.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c init.c -o init.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from init.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c io.c -o io.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from io.c:1:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c mathml.c -o mathml.o
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-version.h:28:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/libsbml-config.h:62,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/common/sbmlfwd.h:35,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:28,
                 from rsbml.h:4,
                 from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:56:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:61:0: warning: ignoring #pragma warning 
C:/libSBML-3.3.2-expat/win32/include/sbml/common/extern.h:70:0: warning: ignoring #pragma warning 
In file included from C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLError.h:294:0,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLError.h:580,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLDocument.h:237,
                 from C:/libSBML-3.3.2-expat/win32/include/sbml/SBMLTypes.h:30,
                 from rsbml.h:4,
                 from mathml.c:3:
C:/libSBML-3.3.2-expat/win32/include/sbml/xml/XMLExtern.h:65:0: warning: ignoring #pragma warning 
mathml.c: In function 'rmathml_SEXP':
mathml.c:56:12: warning: unused variable 'closure'
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include" -g -D_R_=1 -DUSE_R=1 -IC:/libSBML-3.3.2-expat/win32/include -IC:/libSBML-3.3.2-expat/win32/include/expat -IE:/biocbld/BBS-2˜1.7-B/R/include -DLIBSBML3        -O3 -Wall  -std=gnu99 -c simulate.c -o simulate.o
gcc -shared -s -static-libgcc -o rsbml.dll tmp.def StringMap.o check.o doc.o dom.o graph.o init.o io.o mathml.o simulate.o -LC:/libSBML-3.3.2-expat/win32/bin -lsbml -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/rsbml.Rcheck/rsbml/libs/i386
** R
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (rsbml)

rsbml.Rcheck/rsbml-Ex.timings:

nameusersystemelapsed
SBML-class0.280.020.37
SBMLDocument-class0.530.010.55
read0.370.020.39