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Package 83/419HostnameOS / ArchBUILDCHECKBUILD BIN
clippda 1.4.0
Stephen Nyangoma
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/clippda
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  WARNINGS 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ WARNINGS ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 

Summary

Package: clippda
Version: 1.4.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings clippda_1.4.0.tar.gz
StartedAt: 2011-04-07 06:33:37 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 06:40:57 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 440.0 seconds
RetCode: 0
Status:  WARNINGS  
CheckDir: clippda.Rcheck
Warnings: 1

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/clippda.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'clippda/DESCRIPTION' ... OK
* this is package 'clippda' version '1.4.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'clippda' can be installed ... WARNING
Found the following significant warnings:
  Warning: use of a true value for 'ZipData' is deprecated
See 'E:/biocbld/bbs-2.7-bioc/meat/clippda.Rcheck/00install.out' for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... NOTE
Found the following CITATION file(s) in a non-standard place:
  CITATION
Most likely inst/CITATION should be used instead.
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  'E:/biocbld/bbs-2.7-bioc/meat/clippda.Rcheck/00check.log'
for details

clippda.Rcheck/00install.out:

* installing *source* package 'clippda' ...
** R
** data
Warning: use of a true value for 'ZipData' is deprecated
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (clippda)

clippda.Rcheck/clippda-Ex.timings:

nameusersystemelapsed
aclinicalProteomicsData-class0.260.030.32
aclinicalProteomicsData-methods1.000.081.10
betweensampleVariance6.250.016.29
checkNo.replicates0.330.000.32
clippda-package168.80 1.28171.11
fisherInformation0.360.020.38
liverRawData0.010.020.03
liver_pheno0.020.000.02
liverdata7.900.018.01
mostSimilarTwo0.020.000.02
negativeIntensitiesCorrection2.870.002.89
phenoDataFrame0.290.000.28
pheno_urine000
preProcRepeatedPeakData6.820.026.87
proteomicsExprsData0.470.000.58
proteomicspData0.280.000.28
replicateCorrelations9.680.039.80
sampleClusteredData2.900.003.84
sampleSize103.80 0.13104.31
sampleSize3DscatterPlots0.110.000.11
sampleSizeContourPlots0.040.010.08
sampleSizeParameters50.27 0.0250.52
sample_technicalVariance12.43 0.0812.59
spectrumFilter6.680.006.72