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Package 214/419HostnameOS / ArchBUILDCHECKBUILD BIN
ITALICS 2.10.0
Guillem Rigaill
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/ITALICS
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  ERROR  skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  ERROR  skipped  skipped 

Summary

Package: ITALICS
Version: 2.10.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD INSTALL --build --library=ITALICS.buildbin-libdir ITALICS_2.10.0.tar.gz
StartedAt: 2011-04-07 09:29:43 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 09:29:56 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 13.2 seconds
RetCode: 0
Status:  OK  
PackageFile: ITALICS_2.10.0.zip
PackageFileSize: 414.8 KiB

Command output

* installing *source* package 'ITALICS' ...
** R
** inst
** preparing package for lazy loading


######################################################################################



Have fun with GLAD



For smoothing it is possible to use either

the AWS algorithm (Polzehl and Spokoiny, 2002)

or the HaarSeg algorithm (Ben-Yaacov and Eldar, Bioinformatics,  2008)



If you use the package with AWS, please cite:

Hupe et al. (Bioinformatics, 2004) and Polzehl and Spokoiny (2002)



If you use the package with HaarSeg, please cite:

Hupe et al. (Bioinformatics, 2004) and (Ben-Yaacov and Eldar, Bioinformatics, 2008)



For fast computation it is recommanded to use

the daglad function with smoothfunc=haarseg



######################################################################################



New options are available in daglad: see help for details.


Loading required package: oligoClasses
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

================================================================================
Welcome to oligoClasses version 1.12.2
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
================================================================================
Welcome to oligo version 1.14.0
================================================================================
Loading required package: RSQLite
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* MD5 sums
packaged installation of 'ITALICS' as ITALICS_2.10.0.zip

* DONE (ITALICS)