Back to the "Multiple platform build/check report" A  B  C  D  E  F [G] H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 172/419HostnameOS / ArchBUILDCHECKBUILD BIN
Genominator 1.4.2
James Bullard
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/Genominator
Last Changed Rev: 53440 / Revision: 54588
Last Changed Date: 2011-03-04 07:13:04 -0800 (Fri, 04 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: Genominator
Version: 1.4.2
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings Genominator_1.4.2.tar.gz
StartedAt: 2011-04-07 07:13:26 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 07:15:57 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 151.2 seconds
RetCode: 0
Status:  OK  
CheckDir: Genominator.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/Genominator.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'Genominator/DESCRIPTION' ... OK
* this is package 'Genominator' version '1.4.2'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'Genominator' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

Genominator.Rcheck/00install.out:

* installing *source* package 'Genominator' ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: DBI

Attaching package: 'IRanges'

The following object(s) are masked from 'package:base':

    Map, cbind, eval, mapply, order, paste, pmax, pmax.int, pmin,
    pmin.int, rbind, rep.int, table

Loading required package: biomaRt
Loading required package: grid
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (Genominator)

Genominator.Rcheck/Genominator-Ex.timings:

nameusersystemelapsed
ExpData000
addPrimingWeights4.530.535.31
aggregateExpData1.450.021.80
applyMapped1.520.001.71
collapseExpData2.820.033.64
computeCoverage1.050.031.11
computePrimingWeights0.770.361.13
getRegion0.220.020.36
importFromAlignedReads000
importToExpData0.450.000.53
joinExpData3.780.043.84
makeGeneRepresentation0.320.000.32
mergeWithAnnotation0.390.030.44
plot.genominator.coverage3.280.053.48
plot.genominator.goodness.of.fit0.900.021.13
regionGoodnessOfFit-methods0.780.000.80
splitByAnnotation0.890.000.90
summarizeByAnnotation0.470.000.47
summarizeExpData0.590.000.59
validAnnotation0.030.000.04
yeastAnno0.280.000.28