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Package 161/419HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 2.6.0
Martin Slawski
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GeneSelector
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: GeneSelector
Version: 2.6.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings GeneSelector_2.6.0.tar.gz
StartedAt: 2011-04-07 07:08:02 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 07:09:19 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 77.4 seconds
RetCode: 0
Status:  OK  
CheckDir: GeneSelector.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/GeneSelector.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'GeneSelector/DESCRIPTION' ... OK
* this is package 'GeneSelector' version '2.6.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'GeneSelector' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RankingPermutation,matrix-numeric: no visible binding for global
  variable 'test'
RepeatRanking,GeneRanking-BootMatrix-missing-missing-missing: no
  visible binding for global variable 'RankingBstat'
RepeatRanking,GeneRanking-FoldMatrix-ANY-missing-missing: no visible
  binding for global variable 'RankingBstat'
RepeatRanking,GeneRanking-missing-missing-ANY-ANY: no visible binding
  for global variable 'RankingBstat'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

GeneSelector.Rcheck/00install.out:

* installing *source* package 'GeneSelector' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c kendall.c -o kendall.o
kendall.c: In function 'kendall':
kendall.c:3:9: warning: 'tau' may be used uninitialized in this function
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c mcfour.c -o mcfour.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c mct.c -o mct.o
gcc -shared -s -static-libgcc -o GeneSelector.dll tmp.def kendall.o mcfour.o mct.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/GeneSelector.Rcheck/GeneSelector/libs/i386
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneSelector)

GeneSelector.Rcheck/GeneSelector-Ex.timings:

nameusersystemelapsed
AggregateMC0.680.000.69
AggregatePenalty1.110.001.11
AggregateSVD0.460.000.45
AggregateSimple0.430.000.44
GeneSelector3.540.033.61
GenerateBootMatrix0.120.000.14
GenerateFoldMatrix0.090.010.11
GetStabilityDistance0.380.020.39
GetStabilityOverlap0.370.000.38
GetStabilityUnion0.540.000.53
HeatmapRankings3.530.033.58
MergeMethods3.150.053.21
RankingBaldiLong0.080.000.08
RankingEbam0.720.000.75
RankingFC0.030.000.03
RankingFoxDimmic0.060.000.06
RankingLimma0.730.000.74
RankingPermutation1.290.031.31
RankingSam2.210.022.23
RankingShrinkageT0.240.000.24
RankingSoftthresholdT0.190.000.19
RankingTstat0.010.010.03
RankingWelchT0.030.000.03
RankingWilcEbam0.360.020.37
RankingWilcoxon0.440.000.44
RepeatRanking4.280.014.32
toydata0.010.000.02