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Package 161/419HostnameOS / ArchBUILDCHECKBUILD BIN
GeneSelector 2.6.0
Martin Slawski
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GeneSelector
Last Changed Rev: 50293 / Revision: 54588
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: GeneSelector
Version: 2.6.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings GeneSelector_2.6.0.tar.gz
StartedAt: 2011-04-07 06:35:02 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 06:36:00 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 57.6 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneSelector.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/GeneSelector.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneSelector/DESCRIPTION’ ... OK
* this is package ‘GeneSelector’ version ‘2.6.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GeneSelector’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
RankingPermutation,matrix-numeric: no visible binding for global
  variable ‘test’
RepeatRanking,GeneRanking-BootMatrix-missing-missing-missing: no
  visible binding for global variable ‘RankingBstat’
RepeatRanking,GeneRanking-FoldMatrix-ANY-missing-missing: no visible
  binding for global variable ‘RankingBstat’
RepeatRanking,GeneRanking-missing-missing-ANY-ANY: no visible binding
  for global variable ‘RankingBstat’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

GeneSelector.Rcheck/00install.out:

* installing *source* package ‘GeneSelector’ ...
** libs
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c kendall.c -o kendall.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c mcfour.c -o mcfour.o
gcc -std=gnu99 -I/home/biocbuild/bbs-2.7-bioc/R/include  -I/usr/local/include    -fpic  -g -O2 -c mct.c -o mct.o
gcc -std=gnu99 -shared -L/usr/local/lib64 -o GeneSelector.so kendall.o mcfour.o mct.o -L/home/biocbuild/bbs-2.7-bioc/R/lib -lR
installing to /loc/home/biocbuild/bbs-2.7-bioc/meat/GeneSelector.Rcheck/GeneSelector/libs
** R
** data
** inst
** preparing package for lazy loading
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneSelector)

GeneSelector.Rcheck/GeneSelector-Ex.timings:

nameusersystemelapsed
AggregateMC0.7280.0080.733
AggregatePenalty0.8960.0120.908
AggregateSVD0.3960.0080.403
AggregateSimple0.4200.0040.424
GeneSelector2.9120.0402.949
GenerateBootMatrix0.1040.0000.105
GenerateFoldMatrix0.0680.0000.065
GetStabilityDistance0.1960.0120.210
GetStabilityOverlap0.3320.0000.335
GetStabilityUnion0.3040.0000.311
HeatmapRankings2.5480.0322.581
MergeMethods2.5080.0082.514
RankingBaldiLong0.0640.0000.064
RankingEbam0.6640.0120.677
RankingFC0.0160.0000.015
RankingFoxDimmic0.0440.0000.044
RankingLimma0.6720.0040.673
RankingPermutation0.9120.0040.915
RankingSam2.0970.0042.101
RankingShrinkageT0.2200.0000.218
RankingSoftthresholdT0.1560.0040.162
RankingTstat0.0160.0000.017
RankingWelchT0.0160.0000.018
RankingWilcEbam0.3120.0040.316
RankingWilcoxon0.2000.0000.199
RepeatRanking1.6000.0001.602
toydata0.0120.0000.011