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Package 77/419HostnameOS / ArchBUILDCHECKBUILD BIN
ChemmineR 2.2.19
ChemmineR Team
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/ChemmineR
Last Changed Rev: 54265 / Revision: 54588
Last Changed Date: 2011-03-30 14:41:21 -0700 (Wed, 30 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: ChemmineR
Version: 2.2.19
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings ChemmineR_2.2.19.tar.gz
StartedAt: 2011-04-07 05:30:19 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 05:32:38 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 138.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ChemmineR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/ChemmineR.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChemmineR’ version ‘2.2.19’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ChemmineR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.data.frame.to.str: no visible binding for global variable ‘string’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_len’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_descriptor’
.parse: no visible global function definition for ‘Descriptors’
.parse: no visible global function definition for
  ‘Descriptors_parse_sdf’
cmp.parse: no visible global function definition for ‘batch_parse’
cmp.parse1: no visible global function definition for
  ‘delete_Descriptors’
datablock2ma: no visible binding for global variable ‘sdfset’
sdf_to_desc: no visible global function definition for
  ‘delete_Descriptors’
sdfs_to_desc: no visible global function definition for ‘batch_parse’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

ChemmineR.Rcheck/00install.out:

* installing *source* package ‘ChemmineR’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "ChemmineR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChemmineR)

ChemmineR.Rcheck/ChemmineR-Ex.timings:

nameusersystemelapsed
AP-class17.225 0.09217.358
APset-class16.997 0.06817.067
SDF-class0.0760.0040.081
SDF2apcmp0.0240.0040.025
SDFset-class0.8800.0160.899
SDFset2SDF0.1920.0120.205
SDFset2list0.0720.0320.104
SDFstr-class0.3880.0000.390
ap16.717 0.01216.736
apset0.0080.0000.010
apset2descdb16.921 0.06817.070
atomblock0.3200.0160.337
atomcount0.4120.0040.417
atomprop0.0080.0000.007
bondblock0.2640.0040.270
cid2.0000.0001.999
cluster.sizestat0.8080.0000.806
cluster.visualize0.9440.0000.944
cmp.cluster1.9160.0081.928
cmp.duplicated0.0720.0000.073
cmp.parse0.0360.0000.034
cmp.parse10.0000.0000.001
cmp.search0.9960.0121.009
cmp.similarity0.0320.0000.031
conMA0.0760.0120.087
datablock0.7000.0000.704
datablock2ma0.0440.0000.047
db.explain0.0640.0000.066
db.subset0.0080.0000.006
fp2bit0.8240.0200.843
fpSim0.8370.0200.857
getIds000
grepSDFset0.0800.0000.079
header0.3280.0040.329
makeUnique0.0320.0000.032
plotStruc0.2600.0120.272
pubchemFPencoding0.0040.0000.003
read.SDFset0.7680.0040.770
read.SDFstr1.1560.0041.158
sdf.subset000
sdf.visualize0.0240.0000.024
sdf2ap17.161 0.06817.235
sdf2list0.0360.0040.038
sdf2smiles000
sdf2str0.0400.0000.041
sdfid0.0360.0000.038
sdfsample0.0840.0040.085
sdfstr2list0.8400.2681.110
searchSim000
searchString000
smiles2sdf000
validSDF0.040.000.04
view3.5360.0003.535
write.SDF0.3320.0120.349