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Package 26/419HostnameOS / ArchBUILDCHECKBUILD BIN
AnnotationDbi 1.12.1
Biocore Team c/o BioC user list
Snapshot Date: 2011-04-06 23:24:01 -0700 (Wed, 06 Apr 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/AnnotationDbi
Last Changed Rev: 54003 / Revision: 54588
Last Changed Date: 2011-03-24 11:54:53 -0700 (Thu, 24 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 

Summary

Package: AnnotationDbi
Version: 1.12.1
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings AnnotationDbi_1.12.1.tar.gz
StartedAt: 2011-04-07 04:39:19 -0700 (Thu, 07 Apr 2011)
EndedAt: 2011-04-07 04:44:03 -0700 (Thu, 07 Apr 2011)
EllapsedTime: 283.3 seconds
RetCode: 0
Status:  OK 
CheckDir: AnnotationDbi.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/AnnotationDbi.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘AnnotationDbi/DESCRIPTION’ ... OK
* this is package ‘AnnotationDbi’ version ‘1.12.1’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘AnnotationDbi’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

AnnotationDbi.Rcheck/00install.out:

* installing *source* package ‘AnnotationDbi’ ...
** R
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "toString" in "AnnotationDbi"
Creating a new generic function for "rev" in "AnnotationDbi"
Creating a new generic function for "colnames" in "AnnotationDbi"
Creating a new generic function for "subset" in "AnnotationDbi"
Creating a new generic function for "head" in "AnnotationDbi"
Creating a new generic function for "tail" in "AnnotationDbi"
Creating a new generic function for "nrow" in "AnnotationDbi"
Creating a new generic function for "ncol" in "AnnotationDbi"
Creating a new generic function for "as.list" in "AnnotationDbi"
Creating a new generic function for "ls" in "AnnotationDbi"
Creating a new generic function for "mget" in "AnnotationDbi"
Creating a new generic function for "eapply" in "AnnotationDbi"
Creating a new generic function for "get" in "AnnotationDbi"
Creating a new generic function for "exists" in "AnnotationDbi"
Creating a new generic function for "sample" in "AnnotationDbi"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (AnnotationDbi)

AnnotationDbi.Rcheck/AnnotationDbi-Ex.timings:

nameusersystemelapsed
AnnDbBimap-envirAPI1.4520.2921.759
AnnDbObj-class13.465 3.52817.009
AnnDbPkg-checker151.041 1.416158.753
AnnDbPkg-maker0.0520.0040.058
Bimap-direction7.4400.0327.484
Bimap-keys2.3410.0082.352
Bimap-toTable3.3680.0083.394
Bimap3.9760.0083.986
BimapFiltering0.7160.0000.717
BimapFormatting2.0960.0042.098
GOFrame4.7170.1684.915
GOTerms-class0.0040.0000.003
KEGGFrame0.9640.0040.971
available.db0pkgs0.1440.0040.151
createSimpleBimap0.5560.0120.575
getProbeDataAffy0.0000.0040.000
getProbeData_1lq0.0000.0000.001
inpIDMapper0.0000.0000.001
makeProbePackage10.584 0.18010.828
make_eg_to_go_map0.6840.0160.698
print.probetable0.8440.0600.915
sqlForge-makeCHIPDB000
sqlForge-popDB0.0000.0000.001
sqlForge-wrapDBPackages0.0000.0000.001
toSQLStringSet0.0000.0040.001
unlist20.7040.0040.708