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Package 244/419HostnameOS / ArchBUILDCHECKBUILD BIN
marray 1.28.0
Yee Hwa (Jean) Yang
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/marray
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ WARNINGS ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  WARNINGS  OK 

Summary

Package: marray
Version: 1.28.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings marray_1.28.0.tar.gz
StartedAt: 2011-03-31 07:06:15 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 07:07:38 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 82.6 seconds
RetCode: 0
Status:  WARNINGS 
CheckDir: marray.Rcheck
Warnings: 1

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/marray.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘marray/DESCRIPTION’ ... OK
* this is package ‘marray’ version ‘1.28.0’
* checking package name space information ...Warning: unknown namespace directive: function(lib, pkg) require(methods)
 OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘marray’ can be installed ... WARNING
Found the following significant warnings:
  Warning: unknown namespace directive: function(lib, pkg) require(methods)
  Warning: unknown namespace directive: function(lib, pkg) require(methods)
See ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/marray.Rcheck/00install.out’ for details.
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
findID: no visible binding for global variable ‘gnames’
findID: no visible global function definition for ‘phenoData’
htmlPage: no visible binding for global variable ‘Gnames’
maTwoSamples: no visible global function definition for ‘gpTools’
scale.na: no visible global function definition for ‘applyy’
widget.TwoSamples: no visible global function definition for
  ‘widgetRender’
widget.mapGeneInfo: no visible global function definition for
  ‘widgetRender’
* checking Rd files ... NOTE
prepare_Rd: cbind.Rd:35-36: Dropping empty section \value
prepare_Rd: cbind.Rd:41-42: Dropping empty section \examples
prepare_Rd: maCompLayout.Rd:19-21: Dropping empty section \details
prepare_Rd: read.marrayInfo.Rd:30-32: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:35: Dropping empty section \details
prepare_Rd: read.marrayLayout.Rd:42: Dropping empty section \note
prepare_Rd: read.marrayRaw.Rd:73-75: Dropping empty section \details
prepare_Rd: showLargeObject.Rd:26-27: Dropping empty section \examples
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

WARNING: There was 1 warning, see
  ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/marray.Rcheck/00check.log’
for details

marray.Rcheck/00install.out:

* installing *source* package ‘marray’ ...
** R
** data
** inst
** preparing package for lazy loading
Warning: unknown namespace directive: function(lib, pkg) require(methods)
** help
*** installing help indices
** building package indices ...
Warning: unknown namespace directive: function(lib, pkg) require(methods)
** testing if installed package can be loaded

* DONE (marray)

marray.Rcheck/marray-Ex.timings:

nameusersystemelapsed
boxplot0.6520.0200.672
checkTargetInfo0.1800.0040.183
dim0.0040.0000.003
findID0.1160.0000.115
htmlPage0.1440.0000.144
image0.0400.0000.039
ma2D000
maBoxplot000
maColorBar0.0120.0040.013
maCompCoord0.0000.0000.001
maCompInd0.0040.0000.003
maCompLayout0.0080.0000.007
maCompNormA000
maCompPlate0.0040.0040.007
maCoord2Ind0.0040.0000.006
maDefaultPar000
maDotsDefaults0.0000.0000.001
maDotsMatch0.0040.0000.001
maGenControls0.1880.0000.189
maGeneTable0.1040.0040.106
maImage1.1960.0041.200
maImage.func000
maInd2Coord0.0040.0000.004
maLegendLines000
maLoess000
maLoessLines000
maMAD000
maMed0.0000.0000.001
maNorm2.7280.0002.732
maNorm2D0.0000.0040.000
maNormLoess000
maNormMAD000
maNormMain17.449 0.00817.465
maNormMed000
maNormScale0.5080.0000.512
maNum2Logic000
maPalette0.0080.0000.007
maPlot2.7920.0162.810
maPlot.func000
maSelectGnames0.0120.0000.010
maText0.0000.0000.001
maTop000
mapGeneInfo0.0000.0000.001
marrayInfo-class000
marrayLayout-class000
marrayNorm-class0.4240.0000.426
marrayRaw-class0.1760.0000.178
opVersionID0.0000.0000.002
plotMA2.5520.0002.558
read.Galfile0.0760.0000.075
read.marrayInfo0.0560.0000.059
read.marrayLayout0.1080.0000.110
read.marrayRaw2.5730.0202.600
rm.na000
stat.confband.text0.7520.0120.763
stat.gnames0.4160.0080.426
write.list0.1760.0000.176
write.marray0.0640.0040.066
write.xls0.0760.0000.077