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Package 239/419HostnameOS / ArchBUILDCHECKBUILD BIN
maigesPack 1.14.0
Gustavo H. Esteves
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/maigesPack
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: maigesPack
Version: 1.14.0
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings maigesPack_1.14.0.tar.gz
StartedAt: 2011-03-31 07:12:44 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 07:23:31 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 646.8 seconds
RetCode: 0
Status:  OK  
CheckDir: maigesPack.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/maigesPack.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'maigesPack/DESCRIPTION' ... OK
* this is package 'maigesPack' version '1.14.0'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'maigesPack' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking line endings in C/C++/Fortran sources/headers ... OK
* checking line endings in Makefiles ... OK
* checking for portable use of $(BLAS_LIBS) and $(LAPACK_LIBS) ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

maigesPack.Rcheck/00install.out:

* installing *source* package 'maigesPack' ...
** libs
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c Minfo.c -o Minfo.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c bootstrapT.c -o bootstrapT.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c register.c -o register.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c robustCorr.c -o robustCorr.o
gcc -I"E:/biocbld/BBS-2˜1.7-B/R/include"         -O3 -Wall  -std=gnu99 -c stats.c -o stats.o
stats.c: In function 'stats_median_from_sorted_data':
stats.c:80:22: warning: operation on 'i' may be undefined
gcc -shared -s -static-libgcc -o maigesPack.dll tmp.def Minfo.o bootstrapT.o register.o robustCorr.o stats.o -LE:/biocbld/BBS-2˜1.7-B/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/maigesPack.Rcheck/maigesPack/libs/i386
** R
** data
** inst
** preparing package for lazy loading
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: limma
Loading required package: marray
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maigesPack)

maigesPack.Rcheck/maigesPack-Ex.timings:

nameusersystemelapsed
MI0.020.000.02
activeMod5.070.005.11
activeModScoreHTML2.500.002.56
activeNet6.180.006.20
activeNetScoreHTML6.230.036.47
addGeneGrps000
addPaths000
bootstrapCor0.090.000.10
bootstrapMI0.330.000.34
bootstrapT000
boxplot-methods150.88 7.03159.05
bracketMethods0.360.000.36
calcA0.750.040.78
calcW0.790.010.81
classifyKNN0.470.020.50
classifyKNNsc0.530.010.55
classifyLDA2.020.022.07
classifyLDAsc3.750.003.77
classifySVM1.020.001.05
classifySVMsc1.820.011.89
coerce-methods0.330.020.34
compCorr000
createMaigesRaw0.420.020.44
deGenes2by2BootT0.940.000.94
deGenes2by2Ttest0.450.010.48
deGenes2by2Wilcox0.580.000.66
deGenesANOVA0.580.020.73
designANOVA0.20.00.2
dim-methods0.130.000.13
getLabels0.140.030.17
hierM4.230.034.28
hierMde0.850.000.91
image-methods6.000.056.07
kmeansM5.920.005.93
kmeansMde0.910.010.93
loadData000
normLoc3.310.003.31
normOLIN0.130.000.12
normRepLoess0.120.020.14
normScaleLimma177.43 5.93184.60
normScaleMarray92.01 2.2594.73
plot-methods14.41 0.0214.58
plotGenePair0.170.020.19
print-methods0.250.000.25
relNet2TGF0.270.000.27
relNetworkB6.640.006.70
relNetworkM0.170.010.19
robustCorr000
selSpots0.770.000.77
show-methods0.250.000.25
somM4.750.054.81
somMde0.860.010.90
summarizeReplicates6.260.026.30
summary-methods0.280.000.28
tableClass1.990.002.02
tablesDE3.870.034.08