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Package 245/419HostnameOS / ArchBUILDCHECKBUILD BIN
maSigPro 1.22.0
Ana Conesa
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/maSigPro
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: maSigPro
Version: 1.22.0
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch maSigPro_1.22.0.tar.gz
StartedAt: 2011-03-31 06:40:14 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:42:11 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 116.3 seconds
RetCode: 0
Status:  OK 
CheckDir: maSigPro.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/maSigPro.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘maSigPro/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘maSigPro’ version ‘1.22.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘maSigPro’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

maSigPro.Rcheck/00install.out:

* installing *source* package ‘maSigPro’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading Tcl/Tk interface ... done
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (maSigPro)

maSigPro.Rcheck/maSigPro-Ex.timings:

nameusersystemelapsed
PlotGroups0.0720.0030.074
PlotProfiles0.0170.0010.017
T.fit14.426 0.25814.823
average.rows0.0070.0010.008
data.abiotic0.0430.0040.047
edesign.OD0.0030.0010.003
edesign.abiotic0.0030.0010.004
edesignCT0.0020.0000.003
edesignDR0.0030.0010.003
get.siggenes5.8400.1216.008
i.rank0.0010.0000.001
maSigPro 9.444 0.20210.226
make.design.matrix0.0170.0080.025
p.vector3.1920.0823.323
position0.0010.0000.001
reg.coeffs0.0010.0010.001
see.genes2.2880.1382.820
stepback0.0650.0020.066
stepfor0.3110.0050.318
suma2Venn0.0080.0010.043
two.ways.stepback0.2210.0050.231
two.ways.stepfor0.2920.0060.298