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Package 99/419HostnameOS / ArchBUILDCHECKBUILD BIN
crlmm 1.8.11
Benilton S Carvalho , Robert Scharpf , Matt Ritchie
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/crlmm
Last Changed Rev: 52516 / Revision: 54281
Last Changed Date: 2011-02-06 17:30:47 -0800 (Sun, 06 Feb 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: crlmm
Version: 1.8.11
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD INSTALL --build --library=crlmm.buildbin-libdir crlmm_1.8.11.tar.gz
StartedAt: 2011-03-31 08:53:59 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 08:54:31 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 32.5 seconds
RetCode: 0
Status:  OK  
PackageFile: crlmm_1.8.11.zip
PackageFileSize: 8.963 MiB

Command output

* installing *source* package 'crlmm' ...

  Using auto-selected zip option '--use-zip-data'

** libs
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c gtypeCaller.c -o gtypeCaller.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c init.c -o init.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c trimmed.c -o trimmed.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c utils.c -o utils.o
utils.c: In function 'mad_median':
utils.c:124:15: warning: unused variable 'n_ignore'
gcc -shared -s -static-libgcc -o crlmm.dll tmp.def gtypeCaller.o init.o trimmed.o utils.o -LE:/biocbld/bbs-2.7-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/crlmm.buildbin-libdir/crlmm/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

================================================================================
Welcome to oligoClasses version 1.12.2
================================================================================
Large dataset support for 'oligo/crlmm': Disabled
     - Load 'ff'
================================================================================
Parallel computing support for 'oligo/crlmm': Disabled
     - Load 'ff'
     - Load 'snow'
     - Use options(cluster=makeCluster(...))
================================================================================
Loading package bit1.1-6

package:bit (c) 2008/2009 Jens Oehlschlaegel (GPL-2)

creators: bit bitwhich

coercion: as.logical as.integer as.bit as.bitwhich which

operator: ! & | xor != == 

querying: print length any all min max range sum summary

bit access: length<- [ [<- [[ [[<-

for more help type ?bit

Loading package ff2.2-1

- getOption("fftempdir")=="E:/biocbld/bbs-2.7-bioc/tmpdir/RtmphSQNSh"

- getOption("ffextension")=="ff"

- getOption("ffdrop")==TRUE

- getOption("fffinonexit")==TRUE

- getOption("ffpagesize")==65536

- getOption("ffcaching")=="mmnoflush"  -- consider "ffeachflush" if your system stalls on large writes

- getOption("ffbatchbytes")==16095641.6 -- consider a different value for tuning your system

- getOption("ffmaxbytes")==804782080 -- consider a different value for tuning your system

Creating a new generic function for "lines" in "crlmm"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to crlmm version 1.8.11
* MD5 sums
packaged installation of 'crlmm' as crlmm_1.8.11.zip

* DONE (crlmm)