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Package 69/419HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.14.0
Florian Hahne
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/cellHTS2
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: cellHTS2
Version: 2.14.0
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch cellHTS2_2.14.0.tar.gz
StartedAt: 2011-03-31 05:00:06 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 05:06:34 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 388.1 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/cellHTS2.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.14.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.7870.0283.682
ROC-class0.4460.0100.644
ROC1.8240.0142.348
annotate1.3790.0111.832
bdgpbiomart0.4350.0050.515
cellHTS-class1.3510.0281.742
configurationAsScreenPlot0.7910.0251.080
configure1.0640.0181.472
convertOldCellHTS1.6620.0092.101
convertWellCoordinates0.0010.0000.001
data-KcViab0.1810.0050.194
data-KcViabSmall0.0140.0010.016
data-dualCh0.0150.0010.017
data-oldKcViabSmall0.0130.0010.014
getDynamicRange0.9350.0081.156
getEnVisionRawData0.0960.0040.174
getMeasureRepAgreement0.9320.0071.126
getTopTable2.0810.0192.656
getZfactor0.5880.0080.854
imageScreen1.4970.0121.802
normalizePlates2.1960.0162.475
oneRowPerId0.0050.0010.006
plotSpatialEffects1.8770.0122.156
readHTAnalystData1.6710.0081.714
readPlateList1.2980.0121.990
scoreReplicates1.5980.0132.062
scores2calls1.6150.0132.089
setSettings0.0110.0040.036
spatialNormalization2.1740.0422.676
summarizeChannels2.7110.0263.378
summarizeReplicates1.5400.0091.892
templateDescriptionFile0.0030.0010.005
updateCellHTS0.0320.0020.040
write.tabdel0.0420.0030.052
writeReport0.0140.0020.016
writeTab0.0270.0020.029