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Package 69/419HostnameOS / ArchBUILDCHECKBUILD BIN
cellHTS2 2.14.0
Florian Hahne
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/cellHTS2
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  WARNINGS  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  WARNINGS  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: cellHTS2
Version: 2.14.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings cellHTS2_2.14.0.tar.gz
StartedAt: 2011-03-31 04:57:39 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 05:01:06 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 207.3 seconds
RetCode: 0
Status:  OK 
CheckDir: cellHTS2.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/cellHTS2.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘cellHTS2/DESCRIPTION’ ... OK
* this is package ‘cellHTS2’ version ‘2.14.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘cellHTS2’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking for unstated dependencies in tests ... OK
* checking tests ...
  Running ‘test.R’
 OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

cellHTS2.Rcheck/00install.out:

* installing *source* package ‘cellHTS2’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: akima
Loading required package: lattice
locfit 1.5-6 	 2010-01-20 
Scalable Robust Estimators with High Breakdown Point (version 1.1-00)
Creating a new generic function for "lines" in "cellHTS2"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (cellHTS2)

cellHTS2.Rcheck/cellHTS2-Ex.timings:

nameusersystemelapsed
Bscore2.0240.0082.030
ROC-class0.2680.0000.268
ROC1.1480.0001.146
annotate0.8760.0000.875
bdgpbiomart0.3400.0000.342
cellHTS-class0.9280.0080.937
configurationAsScreenPlot0.6280.0080.638
configure0.8560.0120.872
convertOldCellHTS1.0120.0001.014
convertWellCoordinates0.0040.0000.000
data-KcViab0.0960.0000.096
data-KcViabSmall0.0080.0000.009
data-dualCh0.0120.0000.008
data-oldKcViabSmall0.0280.0000.031
getDynamicRange0.5840.0000.587
getEnVisionRawData0.0320.0000.034
getMeasureRepAgreement0.6080.0000.611
getTopTable1.2810.0001.283
getZfactor0.5800.0000.579
imageScreen0.9360.0000.937
normalizePlates1.3960.0001.395
oneRowPerId0.0040.0000.004
plotSpatialEffects1.20.01.2
readHTAnalystData1.0520.0041.057
readPlateList0.7520.0000.753
scoreReplicates0.9720.0000.975
scores2calls1.0080.0001.011
setSettings0.0040.0040.006
spatialNormalization1.3400.0001.337
summarizeChannels1.6840.0001.686
summarizeReplicates1.0000.0001.002
templateDescriptionFile0.0040.0000.001
updateCellHTS0.0160.0000.017
write.tabdel0.0200.0000.019
writeReport0.0080.0000.007
writeTab0.0240.0000.021