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Package 40/419HostnameOS / ArchBUILDCHECKBUILD BIN
beadarray 2.0.6
Mark Dunning
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/beadarray
Last Changed Rev: 53565 / Revision: 54281
Last Changed Date: 2011-03-10 02:48:20 -0800 (Thu, 10 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK [ OK ]
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: beadarray
Version: 2.0.6
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD INSTALL --build --library=beadarray.buildbin-libdir beadarray_2.0.6.tar.gz
StartedAt: 2011-03-31 08:49:35 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 08:49:56 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 20.5 seconds
RetCode: 0
Status:  OK  
PackageFile: beadarray_2.0.6.zip
PackageFileSize: 11.46 MiB

Command output

* installing *source* package 'beadarray' ...

  Using auto-selected zip option '--use-zip-data'

** libs
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c BASH.c -o BASH.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c HULK.c -o HULK.o
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c determiningGridPositions.c -o determiningGridPositions.o
determiningGridPositions.c: In function 'roundLocsFileValues':
determiningGridPositions.c:7:12: warning: unused variable 'vecLength'
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c findAllOutliers.c -o findAllOutliers.o
findAllOutliers.c: In function 'findBeadStatus':
findAllOutliers.c:161:9: warning: 'm' may be used uninitialized in this function
findAllOutliers.c:161:12: warning: 'ma' may be used uninitialized in this function
findAllOutliers.c: In function 'findAllOutliers':
findAllOutliers.c:234:20: warning: 'status' may be used uninitialized in this function
gcc -I"E:/biocbld/bbs-2.7-bioc/R/include"         -O3 -Wall  -std=gnu99 -c imageProcessing.c -o imageProcessing.o
imageProcessing.c: In function 'illuminaBackground':
imageProcessing.c:68:35: warning: statement with no effect
imageProcessing.c:70:0: warning: ignoring #pragma omp parallel
imageProcessing.c:51:9: warning: unused variable 'tmp'
imageProcessing.c:49:48: warning: unused variable 'k'
imageProcessing.c:49:45: warning: unused variable 'j'
imageProcessing.c: In function 'illuminaSharpen':
imageProcessing.c:166:0: warning: ignoring #pragma omp parallel
imageProcessing.c:168:0: warning: ignoring #pragma omp for
imageProcessing.c:175:0: warning: ignoring #pragma omp for
imageProcessing.c:154:22: warning: unused variable 'chunk'
imageProcessing.c:154:12: warning: unused variable 'nthreads'
imageProcessing.c:154:7: warning: unused variable 'tid'
gcc -shared -s -static-libgcc -o beadarray.dll tmp.def BASH.o HULK.o determiningGridPositions.o findAllOutliers.o imageProcessing.o -LE:/biocbld/bbs-2.7-bioc/R/bin/i386 -lR
installing to E:/biocbld/bbs-2.7-bioc/meat/beadarray.buildbin-libdir/beadarray/libs/i386
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "boxplot" in "beadarray"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
Welcome to beadarray version 2.0.6
There have been major changes to beadarray since Bioconductor 2.6 (April 2010). Please see package vignette for details
* MD5 sums
packaged installation of 'beadarray' as beadarray_2.0.6.zip

* DONE (beadarray)