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Package 33/419HostnameOS / ArchBUILDCHECKBUILD BIN
arrayQualityMetrics 3.2.4
Audrey Kauffmann
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/arrayQualityMetrics
Last Changed Rev: 51679 / Revision: 54281
Last Changed Date: 2010-12-27 07:46:05 -0800 (Mon, 27 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK [ OK ] OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: arrayQualityMetrics
Version: 3.2.4
Command: E:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD check --no-vignettes --timings arrayQualityMetrics_3.2.4.tar.gz
StartedAt: 2011-03-31 05:22:45 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 05:30:26 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 461.5 seconds
RetCode: 0
Status:  OK  
CheckDir: arrayQualityMetrics.Rcheck
Warnings: 0

Command output

* using log directory 'E:/biocbld/bbs-2.7-bioc/meat/arrayQualityMetrics.Rcheck'
* using R version 2.12.2 (2011-02-25)
* using platform: i386-pc-mingw32 (32-bit)
* using session charset: ISO8859-1
* using option '--no-vignettes'
* checking for file 'arrayQualityMetrics/DESCRIPTION' ... OK
* this is package 'arrayQualityMetrics' version '3.2.4'
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package 'arrayQualityMetrics' can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
aqm.probesmap: no visible binding for global variable 'ProbesMap'
aqm.report.qm: no visible global function definition for 'svg'
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking examples ... OK
* checking package vignettes in 'inst/doc' ... SKIPPED
* checking PDF version of manual ... OK

arrayQualityMetrics.Rcheck/00install.out:

* installing *source* package 'arrayQualityMetrics' ...
** R
** inst
** preparing package for lazy loading
Loading required package: affy
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: gcrma
Loading required package: preprocessCore

Attaching package: 'affyPLM'

The following object(s) are masked from 'package:stats':

    resid, residuals, weights

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (arrayQualityMetrics)

arrayQualityMetrics.Rcheck/arrayQualityMetrics-Ex.timings:

nameusersystemelapsed
aqm.pmmm15.21 0.5015.80
aqm.prepaffy65.28 3.3868.75
aqm.prepdata148.64 0.53150.20
aqm.qcstats43.53 0.2543.89