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Package 301/419HostnameOS / ArchBUILDCHECKBUILD BIN
PGSEA 1.20.1
Karl Dykema
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/PGSEA
Last Changed Rev: 51562 / Revision: 54281
Last Changed Date: 2010-12-15 15:15:34 -0800 (Wed, 15 Dec 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 [ ERROR ] skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: PGSEA
Version: 1.20.1
Command: chmod a+r PGSEA -R && D:\biocbld\bbs-2.7-bioc\R\bin\R.exe CMD build --keep-empty-dirs PGSEA
StartedAt: 2011-03-31 03:41:17 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 03:43:08 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 110.9 seconds
RetCode: 1
Status:  ERROR  
PackageFile: None
PackageFileSize: NA

Command output

Warning: unknown option '--keep-empty-dirs'
* checking for file 'PGSEA/DESCRIPTION' ... OK
* preparing 'PGSEA':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* creating vignettes ... ERROR
Loading required package: AnnotationDbi
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: org.Hs.eg.db
Loading required package: DBI
Loading required package: GO.db
Loading required package: GSEABase
Loading required package: annotate
Loading required package: graph
Setting options('download.file.method'='curl')
Found 1 file(s)
GSE7023_series_matrix.txt.gz

Error: processing vignette 'PGSEA2.Rnw' failed with diagnostics:
 chunk 1 
Error in file(con, "r") : cannot open the connection
In addition: Warning messages:
1: In download.file(sprintf("ftp://ftp.ncbi.nih.gov/pub/geo/DATA/SeriesMatrix/%s/%s",  :
  download had nonzero exit status
2: In file(con, "r") :
  cannot open file 'D:\biocbld\bbs-2.7-bioc\tmpdir\RtmpiNofAb/GSE7023_series_matrix.txt.gz': No such file or directory
Execution halted