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Package 202/419HostnameOS / ArchBUILDCHECKBUILD BIN
HTqPCR 1.4.0
Heidi Dvinge
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/HTqPCR
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: HTqPCR
Version: 1.4.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings HTqPCR_1.4.0.tar.gz
StartedAt: 2011-03-31 06:37:35 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:38:47 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 71.8 seconds
RetCode: 0
Status:  OK 
CheckDir: HTqPCR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/HTqPCR.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘HTqPCR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘HTqPCR’ version ‘1.4.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘HTqPCR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

HTqPCR.Rcheck/00install.out:

* installing *source* package ‘HTqPCR’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Creating a new generic function for "summary" in "HTqPCR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (HTqPCR)

HTqPCR.Rcheck/HTqPCR-Ex.timings:

nameusersystemelapsed
HTqPCR-package3.4080.0243.436
cbind0.0240.0000.023
changeCtLayout0.0240.0000.026
clusterCt0.6160.0080.621
filterCategory0.0840.0040.089
filterCtData0.2600.0040.262
heatmapSig1.4720.0001.474
limmaCtData0.8760.0160.890
mannwhitneyCtData1.4120.0041.414
normalizeCtData0.3760.0000.378
plotCVBoxes0.1680.0000.170
plotCtBoxes0.0520.0000.053
plotCtCard0.0480.0000.049
plotCtCategory3.0600.0323.092
plotCtCor0.0480.0000.046
plotCtDensity0.0320.0000.031
plotCtHeatmap3.0250.0203.043
plotCtHistogram0.0080.0000.009
plotCtOverview0.1000.0000.103
plotCtPCA0.0360.0000.039
plotCtPairs0.6480.0000.649
plotCtRQ0.3520.0000.350
plotCtReps0.1280.0000.130
plotCtScatter0.0200.0000.023
plotCtSignificance0.3880.0040.391
plotGenes0.0240.0040.026
qPCRpros0.0040.0000.004
qPCRraw0.0040.0000.004
qPCRset-class0.0240.0000.027
readCtData0.0520.0000.050
setCategory5.0160.0125.032
ttestCtData1.0000.0001.002