GeneRfold 1.8.0
Antoine Lucas
| Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011) | | URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GeneRfold | | Last Changed Rev: 50293 / Revision: 54281 | | Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010) |
| lamb2 | Linux (openSUSE 11.2) / x86_64 | OK | OK | |
| liverpool | Windows Server 2003 R2 (32-bit) / x64 | N O T S U P P O R T E D |
| gewurz | Windows Server 2008 R2 Enterprise (64-bit) / x64 | N O T S U P P O R T E D |
| pelham | Mac OS X Leopard (10.5.8) / i386 | OK | OK | [ OK ] |
>>>>>>>
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=GeneRfold.buildbin-libdir GeneRfold_1.8.0.tar.gz'
>>>>>>>
* installing *source* package ‘GeneRfold’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386 -I/usr/local/include/ -fPIC -Wno-conversion -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viennaR.c -o viennaR.o
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/GeneRfold.buildbin-libdir/GeneRfold/libs/i386
** R
** inst
** preparing package for lazy loading
Attaching package: 'GeneR'
The following object(s) are masked from 'package:utils':
relist
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded
* DONE (GeneRfold)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgcc_s.1.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgfortran.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.5.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/i386/GeneRfold.so"
>>>>>>>
>>>>>>> INSTALLATION OF ppc LIBS WITH 'R_ARCH=/ppc R CMD INSTALL --preclean --library=GeneRfold.buildbin-libdir --libs-only GeneRfold_1.8.0.tar.gz'
>>>>>>>
* installing *source* package ‘GeneRfold’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/ppc -I/usr/local/include/ -fPIC -Wno-conversion -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viennaR.c -o viennaR.o
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/GeneRfold.buildbin-libdir/GeneRfold/libs/ppc
* DONE (GeneRfold)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgcc_s.1.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgfortran.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.5.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/ppc/GeneRfold.so"
>>>>>>>
>>>>>>> INSTALLATION OF x86_64 LIBS WITH 'R_ARCH=/x86_64 R CMD INSTALL --preclean --library=GeneRfold.buildbin-libdir --libs-only GeneRfold_1.8.0.tar.gz'
>>>>>>>
* installing *source* package ‘GeneRfold’ ...
checking for gcc... gcc
checking for C compiler default output file name... a.out
checking whether the C compiler works... yes
checking whether we are cross compiling... no
checking for suffix of executables...
checking for suffix of object files... o
checking whether we are using the GNU C compiler... yes
checking whether gcc accepts -g... yes
checking for gcc option to accept ANSI C... none needed
checking for main in -lRNA... yes
configure: creating ./config.status
config.status: creating src/Makevars
** libs
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/x86_64 -I/usr/local/include/ -fPIC -Wno-conversion -I/usr/local/include -fPIC -g -O2 -Wall -pedantic -c viennaR.c -o viennaR.o
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o GeneRfold.so viennaR.o -L/usr/local/lib/ -lRNA -fPIC -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64
* DONE (GeneRfold)
>>>>>>>
>>>>>>> FIXING LINKS FOR GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so
>>>>>>>
install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgcc_s.1.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgfortran.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.5.2.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.dylib" "GeneRfold.buildbin-libdir/GeneRfold/libs/x86_64/GeneRfold.so"