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Package 153/419HostnameOS / ArchBUILDCHECKBUILD BIN
GeneGA 1.0.0
Zhenpeng Li
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GeneGA
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64 N O T   S U P P O R T E D
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64 N O T   S U P P O R T E D
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: GeneGA
Version: 1.0.0
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GeneGA_1.0.0.tar.gz
StartedAt: 2011-03-31 05:51:33 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 05:54:57 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 203.4 seconds
RetCode: 0
Status:  OK 
CheckDir: GeneGA.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/GeneGA.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GeneGA/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘GeneGA’ version ‘1.0.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GeneGA’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
GeneCodon: no visible binding for global variable ‘wSet’
GeneGA: no visible binding for global variable ‘wSet’
GeneGA_internal: no visible binding for global variable ‘wSet’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

GeneGA.Rcheck/00install.out:

* installing *source* package ‘GeneGA’ ...
** R
** data
** inst
** preparing package for lazy loading
Loading required package: GeneR

Attaching package: 'GeneR'

The following object(s) are masked from 'package:utils':

    relist


Attaching package: 'seqinr'

The following object(s) are masked from 'package:GeneRfold':

    dotPlot

The following object(s) are masked from 'package:GeneR':

    translate

hash-2.1.0 provided by Decision Patterns

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GeneGA)

GeneGA.Rcheck/GeneGA-Ex.timings:

nameusersystemelapsed
GeneCodon0.1950.0040.231
GeneFoldGA 9.910 0.03910.099
GeneGA-package10.069 0.02810.137
GeneGA124.578 0.405127.648
plotGeneGA-methods 9.904 0.03910.154
wSet0.0080.0010.009