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Package 176/419HostnameOS / ArchBUILDCHECKBUILD BIN
GGBase 3.10.0
Vince Carey
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GGBase
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: GGBase
Version: 3.10.0
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch GGBase_3.10.0.tar.gz
StartedAt: 2011-03-31 06:04:00 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:08:22 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 261.6 seconds
RetCode: 0
Status:  OK 
CheckDir: GGBase.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/GGBase.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GGBase/DESCRIPTION’ ... OK
* this is package ‘GGBase’ version ‘3.10.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GGBase’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
isCis: no visible global function definition for ‘lookUp’
snpsNear: no visible global function definition for ‘geneIdType’
snpsNear: no visible global function definition for ‘geneIds’
snpLocs.Hs,chrnum-missing: no visible binding for global variable
  ‘hsSnpLocs’
snpLocs.Hs,chrnum-rsid: no visible binding for global variable
  ‘hsSnpLocs’
snpLocs.Hs,missing-rsid: no visible binding for global variable
  ‘hsSnpLocs’
snpLocs.Hs,rsid-ANY: no visible binding for global variable ‘hsSnpLocs’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

GGBase.Rcheck/00install.out:

* installing *source* package ‘GGBase’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GGBase)

GGBase.Rcheck/GGBase-Ex.timings:

nameusersystemelapsed
MAFfilter2.1900.1152.340
SessionInfo-class0.0020.0000.002
casting0.0190.0020.021
featureFilter0.9260.0551.012
gwSnpScreenResult-class0.0030.0010.004
make_smlSet0.4880.0140.505
multiCisTestResult-class0.0020.0000.001
plot_EvG-methods0.7970.0650.890
smlSet-class0.2310.0150.249
smlSummary0.5400.0270.572
snpLocs.Hs20.329 0.62921.665
snpLocs.Hsapiens1.5890.1001.732
snpsNear21.411 0.71222.445