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Package 176/419HostnameOS / ArchBUILDCHECKBUILD BIN
GGBase 3.10.0
Vince Carey
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/GGBase
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: GGBase
Version: 3.10.0
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings GGBase_3.10.0.tar.gz
StartedAt: 2011-03-31 06:19:27 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 06:22:04 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 157.2 seconds
RetCode: 0
Status:  OK 
CheckDir: GGBase.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/GGBase.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘GGBase/DESCRIPTION’ ... OK
* this is package ‘GGBase’ version ‘3.10.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘GGBase’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
isCis: no visible global function definition for ‘lookUp’
snpsNear: no visible global function definition for ‘geneIdType’
snpsNear: no visible global function definition for ‘geneIds’
snpLocs.Hs,chrnum-missing: no visible binding for global variable
  ‘hsSnpLocs’
snpLocs.Hs,chrnum-rsid: no visible binding for global variable
  ‘hsSnpLocs’
snpLocs.Hs,missing-rsid: no visible binding for global variable
  ‘hsSnpLocs’
snpLocs.Hs,rsid-ANY: no visible binding for global variable ‘hsSnpLocs’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

GGBase.Rcheck/00install.out:

* installing *source* package ‘GGBase’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: survival
Loading required package: splines
Loading required package: DBI
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (GGBase)

GGBase.Rcheck/GGBase-Ex.timings:

nameusersystemelapsed
MAFfilter2.3960.0202.417
SessionInfo-class0.0000.0000.001
casting0.0040.0040.005
featureFilter0.5560.0080.580
gwSnpScreenResult-class0.0000.0000.002
make_smlSet0.2280.0000.231
multiCisTestResult-class0.0040.0000.001
plot_EvG-methods0.5000.0200.561
smlSet-class0.1600.0000.162
smlSummary0.3680.0040.375
snpLocs.Hs11.329 0.20811.543
snpLocs.Hsapiens1.1320.0561.207
snpsNear12.013 0.24012.261