Back to the "Multiple platform build/check report" A  B [C] D  E  F  G  H  I  J  K  L  M  N  O  P  Q  R  S  T  U  V  W  X  Y  Z 

Package 77/419HostnameOS / ArchBUILDCHECKBUILD BIN
ChemmineR 2.2.19
ChemmineR Team
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/ChemmineR
Last Changed Rev: 54265 / Revision: 54281
Last Changed Date: 2011-03-30 14:41:21 -0700 (Wed, 30 Mar 2011)
lamb2 Linux (openSUSE 11.2) / x86_64  OK [ OK ]
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK  OK 

Summary

Package: ChemmineR
Version: 2.2.19
Command: /home/biocbuild/bbs-2.7-bioc/R/bin/R CMD check --no-vignettes --timings ChemmineR_2.2.19.tar.gz
StartedAt: 2011-03-31 05:03:41 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 05:05:57 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 135.7 seconds
RetCode: 0
Status:  OK 
CheckDir: ChemmineR.Rcheck
Warnings: 0

Command output

* using log directory ‘/loc/home/biocbuild/bbs-2.7-bioc/meat/ChemmineR.Rcheck’
* using R version 2.12.2 (2011-02-25)
* using platform: x86_64-unknown-linux-gnu (64-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘ChemmineR/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘ChemmineR’ version ‘2.2.19’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘ChemmineR’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... NOTE
.data.frame.to.str: no visible binding for global variable ‘string’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_len’
.gen_atom_pair: no visible global function definition for
  ‘Descriptors_get_descriptor’
.parse: no visible global function definition for ‘Descriptors’
.parse: no visible global function definition for
  ‘Descriptors_parse_sdf’
cmp.parse: no visible global function definition for ‘batch_parse’
cmp.parse1: no visible global function definition for
  ‘delete_Descriptors’
datablock2ma: no visible binding for global variable ‘sdfset’
sdf_to_desc: no visible global function definition for
  ‘delete_Descriptors’
sdfs_to_desc: no visible global function definition for ‘batch_parse’
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

ChemmineR.Rcheck/00install.out:

* installing *source* package ‘ChemmineR’ ...
** R
** data
** inst
** preparing package for lazy loading
Creating a new generic function for "plot" in "ChemmineR"
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (ChemmineR)

ChemmineR.Rcheck/ChemmineR-Ex.timings:

nameusersystemelapsed
AP-class16.745 0.08016.825
APset-class16.505 0.06416.565
SDF-class0.0720.0080.081
SDF2apcmp0.0280.0000.026
SDFset-class0.8720.0240.897
SDFset2SDF0.2000.0040.204
SDFset2list0.0800.0240.104
SDFstr-class0.3880.0000.389
ap16.217 0.01616.230
apset0.0080.0000.009
apset2descdb16.437 0.06416.502
atomblock0.3160.0200.336
atomcount0.4120.0040.417
atomprop0.0080.0000.007
bondblock0.2560.0120.270
cid1.9680.0001.968
cluster.sizestat0.7960.0080.806
cluster.visualize0.9360.0080.945
cmp.cluster1.9160.0081.924
cmp.duplicated0.0760.0000.074
cmp.parse0.0320.0000.033
cmp.parse1000
cmp.search0.9920.0121.005
cmp.similarity0.0320.0000.032
conMA0.0840.0040.088
datablock0.7000.0040.705
datablock2ma0.0480.0000.048
db.explain0.0640.0000.066
db.subset0.0040.0040.006
fp2bit0.8360.0080.842
fpSim0.8440.0160.860
getIds000
grepSDFset0.080.000.08
header0.3320.0000.332
makeUnique0.0320.0040.033
plotStruc0.2720.0000.270
pubchemFPencoding0.0040.0000.004
read.SDFset0.7690.0000.769
read.SDFstr1.1600.0001.158
sdf.subset000
sdf.visualize0.0160.0080.024
sdf2ap16.705 0.05616.766
sdf2list0.0280.0120.039
sdf2smiles000
sdf2str0.0320.0080.039
sdfid0.0400.0000.039
sdfsample0.0880.0000.087
sdfstr2list0.8000.3241.121
searchSim0.0000.0000.001
searchString000
smiles2sdf000
validSDF0.0400.0000.041
view3.4240.0003.422
write.SDF0.3960.0040.400