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Package 63/419HostnameOS / ArchBUILDCHECKBUILD BIN
BufferedMatrixMethods 1.14.0
B. M. Bolstad
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/BufferedMatrixMethods
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK  OK [ OK ]

Summary

Package: BufferedMatrixMethods
Version: 1.14.0
Command: /Users/biocbuild/BBS/utils/build-universal.sh BufferedMatrixMethods_1.14.0.tar.gz /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R BufferedMatrixMethods.buildbin-libdir
StartedAt: 2011-03-31 08:29:36 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 08:29:42 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 5.8 seconds
RetCode: 0
Status:  OK 
PackageFile: BufferedMatrixMethods_1.14.0.tgz
PackageFileSize: 51.18 KiB

Command output

>>>>>>> 
>>>>>>> INSTALLATION WITH 'R CMD INSTALL --preclean --library=BufferedMatrixMethods.buildbin-libdir BufferedMatrixMethods_1.14.0.tar.gz'
>>>>>>> 

* installing *source* package ‘BufferedMatrixMethods’ ...
** libs
*** arch - i386
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.12/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc -arch i386 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/i386  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.12/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: ‘min’ defined but not used
gcc -arch i386 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386
*** arch - ppc
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.12/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc -arch ppc -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/ppc  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.12/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: ‘min’ defined but not used
gcc -arch ppc -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/ppc
*** arch - x86_64
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.12/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c init_package.c -o init_package.o
gcc -arch x86_64 -std=gnu99 -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include -I/Library/Frameworks/R.framework/Versions/2.12/Resources/include/x86_64  -I/usr/local/include -I"/Library/Frameworks/R.framework/Versions/2.12/Resources/library/BufferedMatrix/include"   -fPIC  -g -O2 -Wall -pedantic -c preprocess_bm.c -o preprocess_bm.o
preprocess_bm.c: In function ‘bm_rma_bg_correct’:
preprocess_bm.c:344: warning: unused variable ‘i’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct’:
preprocess_bm.c:378: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_quantile_normalize’:
preprocess_bm.c:593: warning: unused variable ‘current_mode’
preprocess_bm.c: In function ‘R_bm_rma_bg_correct_quantile_normalize’:
preprocess_bm.c:1151: warning: unused variable ‘current_mode’
preprocess_bm.c: At top level:
preprocess_bm.c:453: warning: ‘min’ defined but not used
gcc -arch x86_64 -std=gnu99 -dynamiclib -Wl,-headerpad_max_install_names -undefined dynamic_lookup -single_module -multiply_defined suppress -L/usr/local/lib -o BufferedMatrixMethods.so init_package.o preprocess_bm.o -F/Library/Frameworks/R.framework/.. -framework R -Wl,-framework -Wl,CoreFoundation
installing to /Users/biocbuild/bbs-2.7-bioc/meat/BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64
** R
** preparing package for lazy loading

Attaching package: 'BufferedMatrix'

The following object(s) are masked from 'package:base':

    colMeans, colSums, rowMeans, rowSums

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BufferedMatrixMethods)


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgfortran.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/i386/BufferedMatrixMethods.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/ppc/BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/ppc/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgfortran.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/ppc/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/ppc/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/ppc/BufferedMatrixMethods.so"


>>>>>>> 
>>>>>>> FIXING LINKS FOR BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so
>>>>>>> 

install_name_tool -change "/usr/local/lib/libgcc_s.1.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgcc_s.1.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libgfortran.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libgfortran.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.5.2.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.5.2.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"
install_name_tool -change "/usr/local/lib/libreadline.dylib" "/Library/Frameworks/R.framework/Versions/2.12/Resources/lib/libreadline.dylib" "BufferedMatrixMethods.buildbin-libdir/BufferedMatrixMethods/libs/x86_64/BufferedMatrixMethods.so"