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Package 57/419HostnameOS / ArchBUILDCHECKBUILD BIN
BioNet 1.8.0
Marcus Dittrich
Snapshot Date: 2011-03-30 23:22:56 -0700 (Wed, 30 Mar 2011)
URL: https://hedgehog.fhcrc.org/bioconductor/branches/RELEASE_2_7/madman/Rpacks/BioNet
Last Changed Rev: 50293 / Revision: 54281
Last Changed Date: 2010-10-17 22:34:23 -0700 (Sun, 17 Oct 2010)
lamb2 Linux (openSUSE 11.2) / x86_64  OK  OK 
liverpool Windows Server 2003 R2 (32-bit) / x64  OK  OK  OK 
gewurz Windows Server 2008 R2 Enterprise (64-bit) / x64  OK  OK  OK 
pelham Mac OS X Leopard (10.5.8) / i386  OK [ OK ] OK 

Summary

Package: BioNet
Version: 1.8.0
Command: /Library/Frameworks/R.framework/Versions/2.12/Resources/bin/R CMD check --no-vignettes --timings --no-multiarch BioNet_1.8.0.tar.gz
StartedAt: 2011-03-31 04:49:56 -0700 (Thu, 31 Mar 2011)
EndedAt: 2011-03-31 04:54:15 -0700 (Thu, 31 Mar 2011)
EllapsedTime: 258.2 seconds
RetCode: 0
Status:  OK 
CheckDir: BioNet.Rcheck
Warnings: 0

Command output

* using log directory ‘/Users/biocbuild/bbs-2.7-bioc/meat/BioNet.Rcheck’
* using R version 2.12.2 Patched (2011-02-25 r54591)
* using platform: i386-apple-darwin9.8.0 (32-bit)
* using session charset: UTF-8
* using option ‘--no-vignettes’
* checking for file ‘BioNet/DESCRIPTION’ ... OK
* checking extension type ... Package
* this is package ‘BioNet’ version ‘1.8.0’
* checking package name space information ... OK
* checking package dependencies ... OK
* checking if this is a source package ... OK
* checking whether package ‘BioNet’ can be installed ... OK
* checking package directory ... OK
* checking for portable file names ... OK
* checking for sufficient/correct file permissions ... OK
* checking DESCRIPTION meta-information ... OK
* checking top-level files ... OK
* checking index information ... OK
* checking package subdirectories ... OK
* checking R files for non-ASCII characters ... OK
* checking R files for syntax errors ... OK
* checking whether the package can be loaded ... OK
* checking whether the package can be loaded with stated dependencies ... OK
* checking whether the package can be unloaded cleanly ... OK
* checking whether the name space can be loaded with stated dependencies ... OK
* checking whether the name space can be unloaded cleanly ... OK
* checking for unstated dependencies in R code ... OK
* checking S3 generic/method consistency ... OK
* checking replacement functions ... OK
* checking foreign function calls ... OK
* checking R code for possible problems ... OK
* checking Rd files ... OK
* checking Rd metadata ... OK
* checking Rd cross-references ... OK
* checking for missing documentation entries ... OK
* checking for code/documentation mismatches ... OK
* checking Rd \usage sections ... OK
* checking Rd contents ... OK
* checking for unstated dependencies in examples ... OK
* checking data for non-ASCII characters ... OK
* checking examples ... OK
* checking package vignettes in ‘inst/doc’ ... SKIPPED
* checking PDF version of manual ... OK

BioNet.Rcheck/00install.out:

* installing *source* package ‘BioNet’ ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (BioNet)

BioNet.Rcheck/BioNet-Ex.timings:

nameusersystemelapsed
aggrPvals1.1640.0781.278
bumOptim1.1680.3421.663
compareNetworks2.5020.1433.304
fbum0.0000.0000.001
fbumLL1.4970.3671.925
fdrThreshold1.0080.3491.377
fitBumModel1.7870.3452.149
getCompScores3.5360.2053.789
getEdgeList1.3810.0491.446
hist.bum1.6940.3522.072
largestComp20.822 2.53823.604
largestScoreComp21.812 2.74824.863
loadNetwork.sif000
makeNetwork0.0140.0000.014
mapByVar0.0000.0000.001
permutateNodes25.740 2.77628.821
piUpper1.1970.3751.634
plot.bum2.0210.3812.434
plot3dModule5.4240.9036.394
plotLLSurface1.2790.2141.514
plotModule6.2480.9317.249
print.bum1.2400.3521.637
pvaluesExample0.0180.0010.019
readHeinzGraph0.5360.0070.558
readHeinzTree0.5370.0080.565
rmSelfLoops0.0130.0000.013
runFastHeinz13.937 1.52215.635
save3dModule3.8260.7914.662
saveNetwork2.3650.0922.488
scanFDR1.1910.3811.585
scoreFunction1.2010.4291.651
scoreNodes5.2610.9546.320
scoreOffset1.7110.3582.099
subNetwork0.0590.0020.062
summary.bum1.0370.3541.407
writeHeinz4.3050.7595.136
writeHeinzEdges 9.006 0.99310.221
writeHeinzNodes4.3460.7825.255