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Package 55/83HostnameOS / ArchBUILDCHECKBUILD BIN
leeBamViews 0.99.7
VJ Carey
Snapshot Date: 2010-09-24 00:28:34 -0700 (Fri, 24 Sep 2010)
URL: https://hedgehog.fhcrc.org/bioc-data/trunk/experiment/pkgs/leeBamViews
Last Changed Rev: 1224 / Revision: 1309
Last Changed Date: 2010-05-14 12:18:21 -0700 (Fri, 14 May 2010)
wilson1 Linux (openSUSE 11.1) / x86_64 [ ERROR ] skipped 
liverpool Windows Server 2003 R2 (32-bit) / x64  ERROR  skipped  skipped 
pelham Mac OS X Leopard (10.5.8) / i386  ERROR  skipped  skipped 

Summary

Package: leeBamViews
Version: 0.99.7
Command: /home/biocbuild/bbs-2.6-bioc/R/bin/R CMD build leeBamViews
StartedAt: 2010-09-24 02:00:23 -0700 (Fri, 24 Sep 2010)
EndedAt: 2010-09-24 02:04:58 -0700 (Fri, 24 Sep 2010)
EllapsedTime: 275.1 seconds
RetCode: 1
Status:  ERROR 
PackageFile: None
PackageFileSize: NA

Command output

* checking for file 'leeBamViews/DESCRIPTION' ... OK
* preparing 'leeBamViews':
* checking DESCRIPTION meta-information ... OK
* installing the package to re-build vignettes
* installing *source* package 'leeBamViews' ...
** R
** data
** inst
** preparing package for lazy loading

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    Map, cbind, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
** help
*** installing help indices
** building package indices ...
** testing if installed package can be loaded

* DONE (leeBamViews)
* creating vignettes ... ERROR
Loading required package: Biobase

Welcome to Bioconductor

  Vignettes contain introductory material. To view, type
  'openVignette()'. To cite Bioconductor, see
  'citation("Biobase")' and for packages 'citation(pkgname)'.

Loading required package: Rsamtools
Loading required package: IRanges

Attaching package: 'IRanges'

The following object(s) are masked from 'package:Biobase':

    updateObject

The following object(s) are masked from 'package:base':

    cbind, Map, mapply, order, paste, pmax, pmax.int, pmin, pmin.int,
    rbind, rep.int, table

Loading required package: GenomicRanges
Loading required package: Biostrings
Loading required package: BSgenome
Loading required package: biomaRt
Loading required package: grid

Error: processing vignette 'leeViews.Rnw' failed with diagnostics:
 chunk 4 (label=addso) 
Error in value[[3L]](cond) : 
  Request to BioMart web service failed. Verify if you are still connected to the internet.  Alternatively the BioMart web service is temporarily down.
Execution halted